Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64698 | Canola | nucleus | 80.84 | 80.84 |
| CDX73451 | Canola | cytosol | 77.39 | 80.8 |
| CDY02889 | Canola | nucleus | 66.67 | 80.18 |
| Bra007096.1-P | Field mustard | nucleus | 78.16 | 78.76 |
| CDX78261 | Canola | nucleus | 76.63 | 77.22 |
| Solyc04g049920.2.1 | Tomato | nucleus | 46.74 | 50.62 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 47.89 | 50.61 |
| PGSC0003DMT400027411 | Potato | nucleus | 47.89 | 49.21 |
| KRH47731 | Soybean | nucleus | 43.68 | 42.7 |
| KRH06306 | Soybean | nucleus | 43.3 | 42.01 |
| AT5G53720.1 | Thale cress | cytosol | 16.09 | 42.0 |
| GSMUA_Achr11P... | Banana | nucleus | 38.31 | 37.74 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 39.85 | 37.28 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 39.85 | 37.28 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 41.38 | 36.12 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 41.38 | 35.88 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 40.23 | 35.35 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 40.61 | 34.19 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 40.61 | 34.19 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 41.76 | 34.17 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 40.23 | 33.87 |
| AT1G20880.1 | Thale cress | nucleus | 35.25 | 33.58 |
| AT1G76460.1 | Thale cress | nucleus | 36.4 | 33.33 |
| AT1G33470.1 | Thale cress | cytosol | 30.65 | 32.65 |
| AT1G22330.1 | Thale cress | nucleus | 33.72 | 30.24 |
| AT5G53680.1 | Thale cress | cytosol | 19.54 | 30.18 |
| AT1G78260.1 | Thale cress | nucleus | 32.95 | 29.97 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 19.16 | 28.57 |
| AT2G46780.1 | Thale cress | nucleus | 36.4 | 28.27 |
| AT1G22910.3 | Thale cress | nucleus | 32.57 | 24.5 |
| AT3G06970.1 | Thale cress | nucleus | 19.16 | 15.77 |
| AT3G15010.2 | Thale cress | nucleus | 21.07 | 13.61 |
| AT3G13224.2 | Thale cress | nucleus | 17.62 | 12.85 |
| AT1G17640.1 | Thale cress | nucleus | 17.24 | 12.2 |
| AT2G22090.2 | Thale cress | nucleus | 15.71 | 11.82 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 15.71 | 11.39 |
| AT5G40490.1 | Thale cress | nucleus | 18.39 | 11.35 |
| AT2G41060.3 | Thale cress | nucleus | 19.16 | 11.09 |
| AT4G14300.1 | Thale cress | nucleus | 17.24 | 10.95 |
| AT2G33410.1 | Thale cress | nucleus | 16.86 | 10.89 |
| AT4G26650.1 | Thale cress | nucleus | 18.39 | 10.55 |
| AT3G07810.2 | Thale cress | nucleus | 19.92 | 10.51 |
| AT3G56860.10 | Thale cress | nucleus | 18.77 | 10.25 |
| AT4G36960.2 | Thale cress | cytosol | 14.18 | 9.76 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 16.86 | 9.71 |
| AT2G22100.1 | Thale cress | nucleus | 14.18 | 9.69 |
| AT5G55550.10 | Thale cress | nucleus | 18.01 | 9.27 |
| AT2G19380.1 | Thale cress | nucleus | 16.09 | 6.85 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:824642 | ProteinID:AEE79282.1 | EMBL:AK230287 | ArrayExpress:AT3G54770 |
| EnsemblPlantsGene:AT3G54770 | RefSeq:AT3G54770 | TAIR:AT3G54770 | RefSeq:AT3G54770-TAIR-G | EnsemblPlants:AT3G54770.1 | TAIR:AT3G54770.1 |
| EMBL:AY084706 | ProteinID:CAB77597.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009791 | GO:GO:0010029 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_191037.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009062 | PFscan:PS50102 | PANTHER:PTHR44374 | UniProt:Q9M1S3 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A6C06 | SEG:seg | : | : |
Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
Coordinates
chr3:-:20273672..20276016
Molecular Weight (calculated)
28859.1 Da
IEP (calculated)
9.871
GRAVY (calculated)
-0.618
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.