Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55846 | Canola | nucleus | 77.97 | 78.55 |
| Bra038113.1-P | Field mustard | nucleus | 77.72 | 75.85 |
| CDY25867 | Canola | nucleus | 75.5 | 75.31 |
| CDY26001 | Canola | nucleus | 75.0 | 74.45 |
| CDY24106 | Canola | nucleus | 74.01 | 72.4 |
| Bra039664.1-P | Field mustard | nucleus | 74.26 | 72.29 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 67.08 | 60.36 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 54.7 | 59.41 |
| KRH55109 | Soybean | nucleus | 64.11 | 58.33 |
| KRH26210 | Soybean | nucleus | 62.87 | 58.12 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 51.73 | 53.87 |
| PGSC0003DMT400039802 | Potato | nucleus | 56.68 | 51.35 |
| Solyc12g014210.1.1 | Tomato | nucleus | 39.6 | 47.76 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 48.51 | 44.55 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 48.27 | 44.32 |
| TraesCS3B01G250700.1 | Wheat | golgi | 48.27 | 44.32 |
| Os01t0614500-01 | Rice | nucleus | 49.01 | 44.3 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 48.02 | 43.99 |
| EES03272 | Sorghum | nucleus | 47.52 | 43.15 |
| Zm00001d011336_P002 | Maize | nucleus | 47.52 | 42.86 |
| Zm00001d044469_P003 | Maize | nucleus | 47.03 | 42.51 |
| AT5G53720.1 | Thale cress | cytosol | 9.65 | 39.0 |
| PGSC0003DMT400032256 | Potato | nucleus | 26.73 | 34.62 |
| PGSC0003DMT400031324 | Potato | cytosol | 11.63 | 33.81 |
| AT2G41060.3 | Thale cress | nucleus | 32.67 | 29.27 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 25.74 | 28.57 |
| AT3G56860.10 | Thale cress | nucleus | 31.19 | 26.36 |
| AT1G33470.1 | Thale cress | cytosol | 14.6 | 24.08 |
| AT2G22090.2 | Thale cress | nucleus | 20.05 | 23.34 |
| AT1G20880.1 | Thale cress | nucleus | 15.59 | 22.99 |
| AT1G76460.1 | Thale cress | nucleus | 16.09 | 22.81 |
| AT1G17640.1 | Thale cress | nucleus | 20.54 | 22.49 |
| AT5G53680.1 | Thale cress | cytosol | 9.41 | 22.49 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 9.41 | 21.71 |
| AT1G78260.1 | Thale cress | nucleus | 15.1 | 21.25 |
| AT3G54770.1 | Thale cress | nucleus | 13.61 | 21.07 |
| AT1G22330.1 | Thale cress | nucleus | 14.11 | 19.59 |
| AT3G13224.2 | Thale cress | nucleus | 17.33 | 19.55 |
| AT2G33410.1 | Thale cress | nucleus | 19.31 | 19.31 |
| AT4G14300.1 | Thale cress | nucleus | 19.31 | 18.98 |
| AT5G40490.1 | Thale cress | nucleus | 19.8 | 18.91 |
| AT2G22100.1 | Thale cress | nucleus | 17.33 | 18.32 |
| AT4G36960.2 | Thale cress | cytosol | 16.58 | 17.68 |
| AT3G07810.2 | Thale cress | nucleus | 21.29 | 17.37 |
| AT2G46780.1 | Thale cress | nucleus | 14.11 | 16.96 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 14.85 | 16.67 |
| AT4G26650.1 | Thale cress | nucleus | 17.57 | 15.6 |
| AT1G22910.3 | Thale cress | nucleus | 13.12 | 15.27 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 17.08 | 15.23 |
| AT5G55550.10 | Thale cress | nucleus | 17.33 | 13.81 |
| AT3G06970.1 | Thale cress | nucleus | 10.15 | 12.93 |
| AT2G19380.1 | Thale cress | nucleus | 16.58 | 10.93 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:820730 | UniProt:A0A178V7K4 | ProteinID:AEE75602.1 | ProteinID:AEE75603.1 |
| EMBL:AK316731 | ArrayExpress:AT3G15010 | EnsemblPlantsGene:AT3G15010 | RefSeq:AT3G15010 | TAIR:AT3G15010 | RefSeq:AT3G15010-TAIR-G |
| EnsemblPlants:AT3G15010.2 | TAIR:AT3G15010.2 | EMBL:AY063846 | EMBL:AY091228 | Unigene:At.27179 | ProteinID:BAA97064.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009058 | GO:GO:0009693 |
| GO:GO:0009987 | GO:GO:0010150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_188119.1 | RefSeq:NP_974317.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP02177.1 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 |
| PANTHER:PTHR44678 | PANTHER:PTHR44678:SF2 | UniProt:Q9LKA4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00000A47B0 | SEG:seg | : | : | : |
Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
Coordinates
chr3:+:5052725..5056017
Molecular Weight (calculated)
41782.5 Da
IEP (calculated)
8.709
GRAVY (calculated)
-0.397
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.