Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028973.1-P | Field mustard | nucleus | 72.19 | 84.53 |
| CDY11989 | Canola | nucleus | 71.99 | 84.49 |
| CDY36753 | Canola | nucleus | 71.6 | 83.45 |
| AT4G26650.1 | Thale cress | nucleus | 66.67 | 74.29 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 51.08 | 54.18 |
| KRH14284 | Soybean | nucleus | 50.69 | 53.77 |
| KRG98573 | Soybean | nucleus | 50.69 | 53.65 |
| KRH73860 | Soybean | nucleus | 50.1 | 53.25 |
| PGSC0003DMT400037271 | Potato | nucleus | 49.11 | 52.98 |
| GSMUA_Achr10P... | Banana | nucleus | 45.96 | 52.95 |
| KRH46297 | Soybean | nucleus | 49.9 | 52.82 |
| GSMUA_Achr10P... | Banana | nucleus | 47.34 | 52.17 |
| PGSC0003DMT400076643 | Potato | nucleus | 48.32 | 51.69 |
| Solyc10g006050.2.1 | Tomato | nucleus | 43.39 | 50.81 |
| Solyc12g014600.1.1 | Tomato | nucleus | 42.21 | 48.97 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 48.13 | 48.8 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 42.21 | 48.42 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 43.98 | 48.16 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 43.98 | 48.16 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 43.98 | 48.16 |
| TraesCSU01G068500.1 | Wheat | nucleus | 43.79 | 47.95 |
| Os11t0637700-01 | Rice | plasma membrane | 43.98 | 47.75 |
| Zm00001d007772_P001 | Maize | nucleus | 40.43 | 45.66 |
| Os07t0584500-01 | Rice | nucleus | 42.41 | 45.55 |
| Zm00001d019079_P001 | Maize | cytosol | 40.24 | 45.54 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 42.21 | 45.53 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 42.21 | 45.44 |
| EER98147 | Sorghum | nucleus | 40.43 | 45.25 |
| EER96020 | Sorghum | nucleus | 40.43 | 45.05 |
| AT3G07810.2 | Thale cress | nucleus | 43.79 | 44.85 |
| EER97452 | Sorghum | nucleus | 41.42 | 44.59 |
| Zm00001d019084_P002 | Maize | nucleus | 39.25 | 43.83 |
| Zm00001d006704_P002 | Maize | nucleus | 41.42 | 43.39 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 37.67 | 42.16 |
| TraesCS2A01G190400.1 | Wheat | plastid | 42.21 | 40.3 |
| OQU83904 | Sorghum | nucleus | 34.91 | 39.33 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 41.42 | 38.82 |
| Zm00001d019086_P001 | Maize | nucleus | 40.24 | 38.35 |
| AT2G33410.1 | Thale cress | nucleus | 28.8 | 36.14 |
| AT4G14300.1 | Thale cress | nucleus | 28.21 | 34.79 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 46.35 | 34.61 |
| AT5G53720.1 | Thale cress | cytosol | 6.11 | 31.0 |
| AT3G13224.2 | Thale cress | nucleus | 21.1 | 29.89 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 20.71 | 29.17 |
| AT1G17640.1 | Thale cress | nucleus | 20.91 | 28.73 |
| AT5G40490.1 | Thale cress | nucleus | 21.89 | 26.24 |
| AT4G36960.2 | Thale cress | cytosol | 17.55 | 23.48 |
| AT1G33470.1 | Thale cress | cytosol | 9.47 | 19.59 |
| AT5G53680.1 | Thale cress | cytosol | 6.51 | 19.53 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.31 | 18.29 |
| AT3G54770.1 | Thale cress | nucleus | 9.27 | 18.01 |
| AT3G15010.2 | Thale cress | nucleus | 13.81 | 17.33 |
| AT1G20880.1 | Thale cress | nucleus | 9.07 | 16.79 |
| AT1G76460.1 | Thale cress | nucleus | 9.27 | 16.49 |
| AT3G06970.1 | Thale cress | nucleus | 9.66 | 15.46 |
| AT2G46780.1 | Thale cress | nucleus | 10.06 | 15.18 |
| AT1G78260.1 | Thale cress | nucleus | 8.28 | 14.63 |
| AT1G22330.1 | Thale cress | nucleus | 8.28 | 14.43 |
| AT2G41060.3 | Thale cress | nucleus | 12.23 | 13.75 |
| AT1G22910.3 | Thale cress | nucleus | 9.27 | 13.54 |
| AT3G56860.10 | Thale cress | nucleus | 12.43 | 13.18 |
| AT2G22100.1 | Thale cress | nucleus | 9.66 | 12.83 |
| AT2G22090.2 | Thale cress | nucleus | 8.48 | 12.39 |
| AT2G19380.1 | Thale cress | nucleus | 6.9 | 5.71 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:835649 | UniProt:A0A1P8BF26 | ProteinID:ANM70213.1 | ArrayExpress:AT5G55550 |
| EnsemblPlantsGene:AT5G55550 | RefSeq:AT5G55550 | TAIR:AT5G55550 | RefSeq:AT5G55550-TAIR-G | EnsemblPlants:AT5G55550.10 | Unigene:At.6910 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_001331843.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00084938F7 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
Coordinates
chr5:-:22502064..22504064
Molecular Weight (calculated)
55714.4 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.584
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVCDFNH FSIFQQNKQS SDLIATSSIC
101: VFESSLNLCF SKCKDQIYVL QVEAKKAVPR DDQQVLKRHA SPIHLMSPVH GGGGRTKKIF VGGLPSSITE EEFKNYFDQF GTIADVVVMY DHNTQRPRGF
201: GFITFDSDDA VDRVLHKTFH ELNGKLVEVK RAVPKEISPV SNIRSPLASG VNYGGGSNRM PANSYFNNFA PGPGFYNSLG PVGRRFSPVI GSGRNAVSAF
301: GLGLNHDLSL NLNPSCDGTS STFGYNRIPS NPYFNGASPN RYTSPIGHNR TESPYNSNNR DLWGNRTDTA GPGWNLNVSN GNNRGNWGLP SSSAVSNDNN
401: GFGRNYGTSS GLSSSPFNGF EGSIGELYRG GSVYSDSTWQ QQQLPSQSSH ELDNLSRAYG YDIDNVGSDP SANDPETYNG SYNVGNRQTN RGNKKIHLNK
501: TCNLDTF
101: VFESSLNLCF SKCKDQIYVL QVEAKKAVPR DDQQVLKRHA SPIHLMSPVH GGGGRTKKIF VGGLPSSITE EEFKNYFDQF GTIADVVVMY DHNTQRPRGF
201: GFITFDSDDA VDRVLHKTFH ELNGKLVEVK RAVPKEISPV SNIRSPLASG VNYGGGSNRM PANSYFNNFA PGPGFYNSLG PVGRRFSPVI GSGRNAVSAF
301: GLGLNHDLSL NLNPSCDGTS STFGYNRIPS NPYFNGASPN RYTSPIGHNR TESPYNSNNR DLWGNRTDTA GPGWNLNVSN GNNRGNWGLP SSSAVSNDNN
401: GFGRNYGTSS GLSSSPFNGF EGSIGELYRG GSVYSDSTWQ QQQLPSQSSH ELDNLSRAYG YDIDNVGSDP SANDPETYNG SYNVGNRQTN RGNKKIHLNK
501: TCNLDTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.