Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006050.2.1 | Tomato | nucleus | 89.36 | 97.0 |
| PGSC0003DMT400076643 | Potato | nucleus | 81.49 | 80.8 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 71.7 | 70.5 |
| KRH46297 | Soybean | nucleus | 68.94 | 67.64 |
| KRG98573 | Soybean | nucleus | 68.09 | 66.81 |
| KRH73860 | Soybean | nucleus | 67.02 | 66.04 |
| KRH14284 | Soybean | nucleus | 66.17 | 65.06 |
| GSMUA_Achr10P... | Banana | nucleus | 60.43 | 64.55 |
| GSMUA_Achr10P... | Banana | nucleus | 61.49 | 62.83 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 59.79 | 60.69 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 59.79 | 60.69 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 59.57 | 60.48 |
| TraesCSU01G068500.1 | Wheat | nucleus | 59.36 | 60.26 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 64.04 | 60.2 |
| Os11t0637700-01 | Rice | plasma membrane | 59.79 | 60.17 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 56.38 | 59.95 |
| PGSC0003DMT400074192 | Potato | nucleus | 60.0 | 59.49 |
| PGSC0003DMT400034757 | Potato | nucleus | 57.23 | 57.48 |
| PGSC0003DMT400060554 | Potato | nucleus | 56.81 | 56.81 |
| Bra028973.1-P | Field mustard | nucleus | 51.91 | 56.35 |
| Zm00001d007772_P001 | Maize | nucleus | 53.83 | 56.35 |
| EER97452 | Sorghum | nucleus | 56.38 | 56.26 |
| AT4G26650.1 | Thale cress | nucleus | 54.26 | 56.04 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 55.96 | 55.84 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 55.74 | 55.74 |
| Os07t0584500-01 | Rice | nucleus | 55.96 | 55.72 |
| Zm00001d019079_P001 | Maize | cytosol | 52.98 | 55.58 |
| CDY11989 | Canola | nucleus | 51.06 | 55.56 |
| EER98147 | Sorghum | nucleus | 53.4 | 55.41 |
| EER96020 | Sorghum | nucleus | 53.4 | 55.16 |
| CDY36753 | Canola | nucleus | 50.64 | 54.71 |
| CDX94301 | Canola | nucleus | 51.06 | 54.3 |
| Zm00001d006704_P002 | Maize | nucleus | 55.74 | 54.13 |
| Zm00001d019084_P002 | Maize | nucleus | 51.91 | 53.74 |
| CDX92807 | Canola | nucleus | 51.28 | 53.56 |
| CDX89316 | Canola | endoplasmic reticulum | 50.0 | 52.57 |
| CDY46689 | Canola | nucleus | 51.7 | 52.48 |
| Bra019094.1-P | Field mustard | nucleus | 51.7 | 52.48 |
| Bra026413.1-P | Field mustard | nucleus | 47.02 | 52.25 |
| CDY46690 | Canola | nucleus | 47.23 | 51.87 |
| AT5G55550.10 | Thale cress | nucleus | 52.98 | 49.11 |
| Zm00001d019086_P001 | Maize | nucleus | 55.53 | 49.06 |
| TraesCS2A01G190400.1 | Wheat | plastid | 55.32 | 48.96 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 55.74 | 48.43 |
| OQU83904 | Sorghum | nucleus | 45.96 | 48.0 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 61.06 | 42.27 |
| PGSC0003DMT400009762 | Potato | nucleus | 34.04 | 40.3 |
| PGSC0003DMT400035000 | Potato | nucleus | 36.6 | 38.91 |
| PGSC0003DMT400044195 | Potato | nucleus | 38.51 | 38.11 |
| PGSC0003DMT400012586 | Potato | nucleus | 26.81 | 36.63 |
| PGSC0003DMT400044868 | Potato | nucleus | 25.11 | 34.5 |
| PGSC0003DMT400012372 | Potato | nucleus | 20.64 | 32.66 |
| PGSC0003DMT400006638 | Potato | nucleus | 26.6 | 32.38 |
| PGSC0003DMT400032811 | Potato | nucleus | 26.17 | 31.62 |
| PGSC0003DMT400012369 | Potato | nucleus | 25.11 | 27.0 |
| PGSC0003DMT400010280 | Potato | cytosol | 21.28 | 26.95 |
| PGSC0003DMT400044866 | Potato | extracellular | 25.53 | 22.47 |
| PGSC0003DMT400031324 | Potato | cytosol | 6.6 | 22.3 |
| PGSC0003DMT400025900 | Potato | nucleus | 13.19 | 21.6 |
| PGSC0003DMT400008944 | Potato | nucleus | 11.91 | 21.21 |
| PGSC0003DMT400032256 | Potato | nucleus | 13.83 | 20.83 |
| PGSC0003DMT400008213 | Potato | nucleus | 17.66 | 19.58 |
| PGSC0003DMT400027411 | Potato | nucleus | 10.21 | 18.9 |
| PGSC0003DMT400039802 | Potato | nucleus | 17.23 | 18.16 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 13.83 | 17.86 |
| PGSC0003DMT400072501 | Potato | nucleus | 15.53 | 17.72 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 10.21 | 17.02 |
| PGSC0003DMT400008583 | Potato | nucleus | 20.43 | 16.05 |
| PGSC0003DMT400058431 | Potato | nucleus | 16.17 | 15.51 |
| PGSC0003DMT400016249 | Potato | nucleus | 15.96 | 15.24 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1B537 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400014380 | PGSC:PGSC0003DMG400014380 | EnsemblPlants:PGSC0003DMT400037271 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002960FED | SEG:seg |
Description
Heterogeneous nuclear ribonucleoprotein 27C [Source:PGSC_GENE;Acc:PGSC0003DMG400014380]
Coordinates
chr10:+:1052047..1057045
Molecular Weight (calculated)
50057.5 Da
IEP (calculated)
7.664
GRAVY (calculated)
-0.469
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDLGKLFI GGISWDTDED RLKEYFSSYG EVVEAVIMRD RNTGRARGFG FVVFVDPVVA ERVVKEKHMI DGRTVEAKKA VPRDDQQIVN RNNSSIQGSP
101: GGGRTKKIFV GGLASTVTES DFKTYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DRTLFKSFHE LNGKLVEVKR AVPKELSPAP SRSPFMGYNY
201: GLNRANNFLN NYAAQGYNLA SVGGYGVRMD GRFSPVAGAR AGFSQFASPA YGMGVNLDPA LSPTFAGASN FSNNLGYGRI LNPYFGANSS RYTTPIGYST
301: SNNRADSFLS SPTRNLWGNI GLNASASSGG PGSFVGSGSG NYGVFGNNNA NWGSLISVPG GNSSGYGGGN FRSGENNYGL GSGGLGRNNA ATTSSFTAST
401: GAYEGSYGDQ FRGASMYGDR TWQGVSSDAD GSGSFEYGLG NPADVSAKDS EDYIGNYSIA NRQPNRGIAA
101: GGGRTKKIFV GGLASTVTES DFKTYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DRTLFKSFHE LNGKLVEVKR AVPKELSPAP SRSPFMGYNY
201: GLNRANNFLN NYAAQGYNLA SVGGYGVRMD GRFSPVAGAR AGFSQFASPA YGMGVNLDPA LSPTFAGASN FSNNLGYGRI LNPYFGANSS RYTTPIGYST
301: SNNRADSFLS SPTRNLWGNI GLNASASSGG PGSFVGSGSG NYGVFGNNNA NWGSLISVPG GNSSGYGGGN FRSGENNYGL GSGGLGRNNA ATTSSFTAST
401: GAYEGSYGDQ FRGASMYGDR TWQGVSSDAD GSGSFEYGLG NPADVSAKDS EDYIGNYSIA NRQPNRGIAA
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.