Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g072790.2.1 | Tomato | nucleus | 94.71 | 95.43 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 13.85 | 59.14 |
| GSMUA_Achr10P... | Banana | nucleus | 31.99 | 51.21 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 44.33 | 40.55 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 40.81 | 37.16 |
| KXG38359 | Sorghum | nucleus | 42.32 | 37.09 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 42.07 | 36.95 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 42.07 | 36.78 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 42.07 | 36.78 |
| Zm00001d032739_P001 | Maize | nucleus | 40.81 | 36.57 |
| PGSC0003DMT400035000 | Potato | nucleus | 40.05 | 35.97 |
| PGSC0003DMT400044195 | Potato | nucleus | 42.32 | 35.37 |
| PGSC0003DMT400037271 | Potato | nucleus | 40.3 | 34.04 |
| PGSC0003DMT400012586 | Potato | nucleus | 29.47 | 34.01 |
| Zm00001d014058_P002 | Maize | plastid | 40.55 | 33.4 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 42.07 | 32.75 |
| PGSC0003DMT400074192 | Potato | nucleus | 38.79 | 32.49 |
| PGSC0003DMT400076643 | Potato | nucleus | 38.04 | 31.86 |
| PGSC0003DMT400012372 | Potato | nucleus | 23.68 | 31.65 |
| PGSC0003DMT400034757 | Potato | nucleus | 36.78 | 31.2 |
| PGSC0003DMT400044868 | Potato | nucleus | 26.45 | 30.7 |
| PGSC0003DMT400006638 | Potato | nucleus | 29.72 | 30.57 |
| PGSC0003DMT400060554 | Potato | nucleus | 34.76 | 29.36 |
| PGSC0003DMT400032811 | Potato | nucleus | 27.46 | 28.02 |
| PGSC0003DMT400012369 | Potato | nucleus | 28.97 | 26.32 |
| PGSC0003DMT400010280 | Potato | cytosol | 22.67 | 24.26 |
| PGSC0003DMT400031324 | Potato | cytosol | 7.3 | 20.86 |
| PGSC0003DMT400008944 | Potato | nucleus | 13.85 | 20.83 |
| PGSC0003DMT400025900 | Potato | nucleus | 14.11 | 19.51 |
| PGSC0003DMT400044866 | Potato | extracellular | 26.2 | 19.48 |
| PGSC0003DMT400008213 | Potato | nucleus | 18.89 | 17.69 |
| PGSC0003DMT400027411 | Potato | nucleus | 11.08 | 17.32 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 15.87 | 17.31 |
| PGSC0003DMT400032256 | Potato | nucleus | 13.6 | 17.31 |
| PGSC0003DMT400039802 | Potato | nucleus | 18.89 | 16.82 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 11.59 | 16.31 |
| PGSC0003DMT400008583 | Potato | nucleus | 24.18 | 16.05 |
| PGSC0003DMT400058431 | Potato | nucleus | 16.88 | 13.67 |
| PGSC0003DMT400072501 | Potato | nucleus | 13.6 | 13.11 |
| PGSC0003DMT400016249 | Potato | nucleus | 14.86 | 11.99 |
Protein Annotations
| EntrezGene:102596592 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0ZWX2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400003821 | PGSC:PGSC0003DMG400003821 | EnsemblPlants:PGSC0003DMT400009762 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295B0BB | RefSeq:XP_006358414.1 | SEG:seg |
Description
RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003821]
Coordinates
chr9:-:50765836..50769308
Molecular Weight (calculated)
43245.5 Da
IEP (calculated)
5.588
GRAVY (calculated)
-0.634
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDEGKLFV GGLGWDIKED KLRDYFTHYG EVTHAIIMRD RVTGLSRGFA FVVFSDPSVI DAILQENHTI DGRPVEAKRA LPRAQQQSLR SRLPHASEDT
101: RLVMRNLNNR TRKIFVGGLP SSLTEEEFCQ YFQDYGNVTD KVIMFDPNTG RPRGFGFITF DSEDAVDRVL HKTFHELKNR IVEVKRALPK EANPAGNDYG
201: GGYLGYGSSD PYRFPQPAFC GYTPYNSYGA LNYGYGYGYD PYTCYGGAAG VYMNPSLASI VYGNSLPGVT RNQWNSQNLG HGDFYNLNAS YGASSSWGAS
301: STRGVILSST STSQGHASQN NNQGNGCSIY TENEGPITDS DGNETGDRHT GSAPNSSSGE ATTQAGQHEA NGCNTTRVFD SSNGSPGFPD AALVSDK
101: RLVMRNLNNR TRKIFVGGLP SSLTEEEFCQ YFQDYGNVTD KVIMFDPNTG RPRGFGFITF DSEDAVDRVL HKTFHELKNR IVEVKRALPK EANPAGNDYG
201: GGYLGYGSSD PYRFPQPAFC GYTPYNSYGA LNYGYGYGYD PYTCYGGAAG VYMNPSLASI VYGNSLPGVT RNQWNSQNLG HGDFYNLNAS YGASSSWGAS
301: STRGVILSST STSQGHASQN NNQGNGCSIY TENEGPITDS DGNETGDRHT GSAPNSSSGE ATTQAGQHEA NGCNTTRVFD SSNGSPGFPD AALVSDK
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.