Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g049920.2.1 | Tomato | nucleus | 87.01 | 91.7 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 71.26 | 73.28 |
| KRH06306 | Soybean | nucleus | 54.33 | 51.3 |
| CDY02889 | Canola | nucleus | 43.7 | 51.15 |
| KRH47731 | Soybean | nucleus | 53.15 | 50.56 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 54.33 | 49.46 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 57.09 | 48.49 |
| CDX73451 | Canola | cytosol | 47.64 | 48.4 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 57.09 | 48.17 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 52.76 | 48.03 |
| AT3G54770.1 | Thale cress | nucleus | 49.21 | 47.89 |
| Bra007096.1-P | Field mustard | nucleus | 48.82 | 47.88 |
| CDX78261 | Canola | nucleus | 48.82 | 47.88 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 54.33 | 46.46 |
| CDY64698 | Canola | nucleus | 47.64 | 46.36 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 55.12 | 45.16 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 55.12 | 45.16 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 55.12 | 45.16 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 56.3 | 44.83 |
| GSMUA_Achr11P... | Banana | nucleus | 45.67 | 43.77 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.98 | 37.5 |
| PGSC0003DMT400025900 | Potato | nucleus | 37.01 | 32.75 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 30.71 | 27.66 |
| PGSC0003DMT400032256 | Potato | nucleus | 18.5 | 15.06 |
| PGSC0003DMT400039802 | Potato | nucleus | 25.98 | 14.8 |
| PGSC0003DMT400044868 | Potato | nucleus | 19.68 | 14.62 |
| PGSC0003DMT400006638 | Potato | nucleus | 19.68 | 12.95 |
| PGSC0003DMT400012586 | Potato | nucleus | 17.32 | 12.79 |
| PGSC0003DMT400008213 | Potato | nucleus | 21.26 | 12.74 |
| PGSC0003DMT400032811 | Potato | nucleus | 19.29 | 12.6 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 17.72 | 12.36 |
| PGSC0003DMT400012372 | Potato | nucleus | 14.17 | 12.12 |
| PGSC0003DMT400035000 | Potato | nucleus | 19.29 | 11.09 |
| PGSC0003DMT400009762 | Potato | nucleus | 17.32 | 11.08 |
| PGSC0003DMT400044195 | Potato | nucleus | 20.47 | 10.95 |
| PGSC0003DMT400072501 | Potato | nucleus | 17.72 | 10.92 |
| PGSC0003DMT400074192 | Potato | nucleus | 20.08 | 10.76 |
| PGSC0003DMT400076643 | Potato | nucleus | 19.68 | 10.55 |
| PGSC0003DMT400010280 | Potato | cytosol | 15.35 | 10.51 |
| PGSC0003DMT400060554 | Potato | nucleus | 19.29 | 10.43 |
| PGSC0003DMT400037271 | Potato | nucleus | 18.9 | 10.21 |
| PGSC0003DMT400012369 | Potato | nucleus | 17.32 | 10.07 |
| PGSC0003DMT400058431 | Potato | nucleus | 19.29 | 10.0 |
| PGSC0003DMT400016249 | Potato | nucleus | 19.29 | 9.96 |
| PGSC0003DMT400034757 | Potato | nucleus | 18.11 | 9.83 |
| PGSC0003DMT400031324 | Potato | cytosol | 5.12 | 9.35 |
| PGSC0003DMT400044866 | Potato | extracellular | 19.29 | 9.18 |
| PGSC0003DMT400008583 | Potato | nucleus | 14.17 | 6.02 |
Protein Annotations
| EntrezGene:102600976 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009791 | GO:GO:0010029 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M1APN3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400010572 | PGSC:PGSC0003DMG400010572 | EnsemblPlants:PGSC0003DMT400027411 |
| PFscan:PS50102 | PANTHER:PTHR44374 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000294B3B9 | SEG:seg | : | : | : | : |
Description
RNA-binding region-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010572]
Coordinates
chr4:-:48478095..48480455
Molecular Weight (calculated)
27503.5 Da
IEP (calculated)
9.289
GRAVY (calculated)
-0.468
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMSNINHNN LGDTTLTKVF VGGLAWETPK EAMKEHFDKY GDILEAVIIS DKLTGRSKGY GFVTFKDAES AKKACEDATP IINGRRANCN LASLGARRSR
101: PSPSITPPPP PQQGANVVGP RANSASPASH VQWYYPAAAP QAAAPASPFH HQHHHQPLPF YGYSPAYIAT DVNYNHKVSY NGGGYMNGHF SQVYPSQAMM
201: PMYPYYHFHH QSQTMGLPAH IYSPTPAGPI PALPALMSKP TSIPPTAGTP SVSY
101: PSPSITPPPP PQQGANVVGP RANSASPASH VQWYYPAAAP QAAAPASPFH HQHHHQPLPF YGYSPAYIAT DVNYNHKVSY NGGGYMNGHF SQVYPSQAMM
201: PMYPYYHFHH QSQTMGLPAH IYSPTPAGPI PALPALMSKP TSIPPTAGTP SVSY
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.