Factsheet for PGSC0003DMT400044866

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044868	Potato	nucleus	63.86	99.71
Solyc07g045240.2.1	Tomato	nucleus	63.11	98.25
KRH17717	Soybean	nucleus	45.51	69.03
VIT_12s0057g01280.t01	Wine grape	nucleus	32.96	68.22
GSMUA_Achr1P19260_001	Banana	nucleus	39.7	62.72
GSMUA_AchrUn_...	Banana	cytosol	38.2	62.01
GSMUA_Achr1P09440_001	Banana	cytosol	38.76	61.06
Os08t0320100-01	Rice	nucleus	39.14	59.71
EES01076	Sorghum	nucleus	38.95	59.6
AT3G13224.2	Thale cress	nucleus	39.89	59.5
CDY24201	Canola	nucleus	40.26	59.39
Bra039380.1-P	Field mustard	nucleus	40.07	59.12
CDY43360	Canola	nucleus	40.07	59.12
Zm00001d030579_P001	Maize	mitochondrion	38.2	58.62
TraesCS6D01G272500.1	Wheat	nucleus	36.14	55.62
TraesCS6A01G291100.1	Wheat	nucleus	34.83	54.55
GSMUA_Achr8P25380_001	Banana	nucleus	38.58	54.35
TraesCS6B01G321300.2	Wheat	nucleus	36.14	51.74
PGSC0003DMT400032811	Potato	nucleus	37.45	51.41
HORVU7Hr1G060930.1	Barley	plasma membrane	33.9	51.13
TraesCS7A01G282600.1	Wheat	cytosol	32.96	50.29
TraesCS7B01G178300.1	Wheat	nucleus	33.33	50.0
TraesCS7D01G281300.1	Wheat	nucleus	32.96	49.58
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	35.21	49.09
GSMUA_Achr9P12880_001	Banana	cytosol	20.22	46.96
OQU81002	Sorghum	nucleus	25.47	40.6
PGSC0003DMT400006638	Potato	nucleus	26.59	36.79
PGSC0003DMT400012372	Potato	nucleus	19.48	35.02
PGSC0003DMT400012369	Potato	nucleus	24.91	30.43
Os08t0492100-02	Rice	nucleus	23.97	29.36
PGSC0003DMT400012586	Potato	nucleus	18.73	29.07
PGSC0003DMT400035000	Potato	nucleus	23.97	28.96
PGSC0003DMT400044195	Potato	nucleus	25.09	28.21
PGSC0003DMT400074192	Potato	nucleus	24.34	27.43
PGSC0003DMT400009762	Potato	nucleus	19.48	26.2
PGSC0003DMT400034757	Potato	nucleus	22.47	25.64
PGSC0003DMT400037271	Potato	nucleus	22.47	25.53
PGSC0003DMT400076643	Potato	nucleus	22.66	25.53
PGSC0003DMT400060554	Potato	nucleus	21.35	24.26
PGSC0003DMT400010280	Potato	cytosol	16.1	23.18
PGSC0003DMT400008944	Potato	nucleus	10.49	21.21
PGSC0003DMT400025900	Potato	nucleus	10.86	20.21
PGSC0003DMT400027411	Potato	nucleus	9.18	19.29
PGSC0003DMT400032256	Potato	nucleus	11.05	18.91
PGSC0003DMT400031324	Potato	cytosol	4.68	17.99
PGSC0003DMT400039802	Potato	nucleus	14.61	17.49
PGSC0003DMT400035478	Potato	nucleus, plastid	9.18	17.38
PGSC0003DMT400008213	Potato	nucleus	13.67	17.22
PGSC0003DMT400031418	Potato	extracellular, golgi	11.42	16.76
PGSC0003DMT400016249	Potato	nucleus	14.79	16.06
PGSC0003DMT400058431	Potato	nucleus	14.23	15.51
PGSC0003DMT400072501	Potato	nucleus	11.8	15.29
PGSC0003DMT400008583	Potato	nucleus	15.17	13.55

Protein Annotations

EntrezGene:102605451	EntrezGene:102605795	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BGT3	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG401017409	PGSC:PGSC0003DMG401017409	EnsemblPlants:PGSC0003DMT400044866	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029487C9
RefSeq:XP_006357668.1	RefSeq:XP_006357669.1	SEG:seg	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG401017409]

Coordinates

chr7:+:43236470..43240613

Molecular Weight (calculated)

53599.0 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.725

Length

534 amino acids

Sequence
(BLAST)

001: MGSRKNDFGD GASPGKIFIG GVAKETTREQ FVKYFEKYGE IIDSVIMKDR QTGRPRGFGF ITFADPTVVD TVIAENHIIN DKQVEIKRTI PKGSADSKDF
101: KTRKIFVGGI PTTMTEDEFK NFFSKFGKVT EYEIIRDHVS KRSRGFGFIV FDNEEVVDNL LAEGNRMDMM GTQVEIKKAE PKKPSNPASA PAYGSNSRGR
201: GYGDSYGGFA DSYSGYDSGG FGPASYRSFG SRYGDYGYGG RYGDFGSSEF GGYRGDPSLG YSSRFGSYAG GYGGGYSSSG LGAYGRGGGY GGYGGAGPGA
301: GYESGPGAGY ESGPGAGYES GPGAGYESGP GAGYESGPGA GYESGPGAGY ESGPGAGYES GPGAGYESGP GAGYESGPGA GYESGPGAGY ESGPGAGYES
401: GPGAGYESGP GAGYESGPGA GYESGPGAGY ESGPGAGYES GPGAGYESGP GAGYESGPGA GYESGPGAGY ESGPGAGYES GPGAGYESGP GAGYESGPGA
501: AYESGTGAGY GGSGGLYGSR GGYSGSGRYH PYSR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.