Factsheet for Solyc07g045240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044868	Potato	nucleus	97.96	98.25
KRH17717	Soybean	nucleus	69.97	68.18
VIT_12s0057g01280.t01	Wine grape	nucleus	50.73	67.44
PGSC0003DMT400044866	Potato	extracellular	98.25	63.11
GSMUA_Achr1P19260_001	Banana	nucleus	61.81	62.72
GSMUA_AchrUn_...	Banana	cytosol	59.18	61.7
GSMUA_Achr1P09440_001	Banana	cytosol	59.48	60.18
AT3G13224.2	Thale cress	nucleus	62.1	59.5
Os08t0320100-01	Rice	nucleus	60.64	59.43
CDY24201	Canola	nucleus	62.68	59.39
Bra039380.1-P	Field mustard	nucleus	62.39	59.12
CDY43360	Canola	nucleus	62.39	59.12
EES01076	Sorghum	nucleus	59.77	58.74
Zm00001d030579_P001	Maize	mitochondrion	58.6	57.76
TraesCS6D01G272500.1	Wheat	nucleus	56.27	55.62
TraesCS6A01G291100.1	Wheat	nucleus	54.23	54.55
GSMUA_Achr8P25380_001	Banana	nucleus	59.77	54.09
TraesCS6B01G321300.2	Wheat	nucleus	56.27	51.74
Solyc02g093340.2.1	Tomato	nucleus	58.6	51.67
HORVU7Hr1G060930.1	Barley	plasma membrane	52.77	51.13
TraesCS7A01G282600.1	Wheat	cytosol	51.6	50.57
TraesCS7B01G178300.1	Wheat	nucleus	52.19	50.28
TraesCS7D01G281300.1	Wheat	nucleus	51.6	49.86
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	54.81	49.09
GSMUA_Achr9P12880_001	Banana	cytosol	31.49	46.96
Solyc03g121710.2.1	Tomato	nucleus	32.65	41.64
OQU81002	Sorghum	nucleus	39.36	40.3
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	38.48	35.58
Solyc06g062740.1.1	Tomato	cytosol	19.24	33.5
Solyc04g014820.2.1	Tomato	cytosol	23.91	30.6
Solyc06g062730.1.1	Tomato	nucleus	31.78	29.7
Solyc04g077520.2.1	Tomato	nucleus	29.45	29.62
Os08t0492100-02	Rice	nucleus	37.03	29.13
Solyc03g005680.2.1	Tomato	nucleus	36.15	29.04
Solyc09g090520.2.1	Tomato	nucleus	39.07	28.21
Solyc09g072790.2.1	Tomato	nucleus	29.74	25.89
Solyc12g006180.1.1	Tomato	nucleus	32.94	25.8
Solyc11g012470.1.1	Tomato	nucleus	32.07	25.7
Solyc07g048030.2.1	Tomato	nucleus	32.36	25.4
Solyc12g014600.1.1	Tomato	nucleus	30.32	23.8
Solyc02g090910.2.1	Tomato	nucleus	25.36	23.14
Solyc10g006050.2.1	Tomato	nucleus	29.15	23.09
Solyc02g064540.1.1	Tomato	nucleus	23.03	21.35
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	16.04	21.07
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	13.99	19.92
Solyc04g049920.2.1	Tomato	nucleus	13.99	19.92
Solyc02g082270.2.1	Tomato	nucleus	14.58	17.73
Solyc02g021560.2.1	Tomato	nucleus	21.87	17.4
Solyc04g011560.2.1	Tomato	nucleus	21.57	15.74
Solyc04g074310.2.1	Tomato	nucleus	13.12	15.36
Solyc10g081330.1.1	Tomato	nucleus	18.37	15.11
Solyc01g008970.2.1	Tomato	nucleus	16.33	14.89
Solyc12g014210.1.1	Tomato	nucleus	13.12	13.43

Protein Annotations

EnsemblPlants:Solyc07g045240.2.1	EnsemblPlantsGene:Solyc07g045240.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45276	PANTHER:PTHR45276:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276CA0B	UniProt:K4CET1	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7:+:58371497..58374151

Molecular Weight (calculated)

36431.9 Da

IEP (calculated)

9.144

GRAVY (calculated)

-0.673

Length

343 amino acids

Sequence
(BLAST)

001: MGSRKNDYGD GASPGKIFIG GVAKETTREQ FVKYFEKYGE IIDSVIMKDR QTGRPRGFGF ITFADPTVVD TVIAENHIIN DKQVEIKRTI PKGSADSKDF
101: KTRKIFVGGI PTTMTEDEFK NFFSKFGKVT EYEIIRDHVS KRSRGFGFIV FDNEEVVDNL LAEGNRMDMM GTQVEIKKAE PKKPSNPASA PAYGSNSRGR
201: GFGDSYGGFA DSYSGYDSGG FGPAPYRSFG SRYGDYGYSG RYGDFGSSEF GGGYRGDPSL GYSSRFGSYA GGYGGGYSSS GLGAYGRGGG YGGYGGAGPG
301: AGYESGPGAA YESGSGAGYG GSGGLYGSRG GYSGSGRYHP YSR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.