Factsheet for Solyc02g064540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008583	Potato	nucleus	85.95	53.18
Solyc06g062740.1.1	Tomato	cytosol	15.68	29.44
Solyc03g121710.2.1	Tomato	nucleus	20.27	27.88
Solyc04g077520.2.1	Tomato	nucleus	25.68	27.86
Solyc04g014820.2.1	Tomato	cytosol	18.65	25.75
Solyc07g045240.2.1	Tomato	nucleus	21.35	23.03
Solyc09g072790.2.1	Tomato	nucleus	23.51	22.08
Solyc03g005680.2.1	Tomato	nucleus	23.51	20.37
Solyc02g093340.2.1	Tomato	nucleus	20.81	19.79
Solyc09g090520.2.1	Tomato	nucleus	24.32	18.95
Solyc12g014600.1.1	Tomato	nucleus	21.89	18.54
Solyc10g006050.2.1	Tomato	nucleus	21.62	18.48
Solyc07g048030.2.1	Tomato	nucleus	21.62	18.31
Solyc06g062730.1.1	Tomato	nucleus	18.11	18.26
Solyc12g006180.1.1	Tomato	nucleus	21.35	18.04
Solyc11g012470.1.1	Tomato	nucleus	20.81	17.99
Solyc02g090910.2.1	Tomato	nucleus	17.57	17.29
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	15.95	15.9
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	10.27	15.77
Solyc04g049920.2.1	Tomato	nucleus	10.0	15.35
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	10.0	14.18
Solyc04g074310.2.1	Tomato	nucleus	10.81	13.65
Solyc01g008970.2.1	Tomato	nucleus	13.51	13.3
Solyc02g082270.2.1	Tomato	nucleus	10.0	13.12
Solyc02g021560.2.1	Tomato	nucleus	15.14	12.99
Solyc12g014210.1.1	Tomato	nucleus	11.62	12.84
Solyc10g081330.1.1	Tomato	nucleus	13.24	11.75
Solyc04g011560.2.1	Tomato	nucleus	11.62	9.15

Protein Annotations

EnsemblPlants:Solyc02g064540.1.1	EnsemblPlantsGene:Solyc02g064540.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000276882F	UniProt:K4B6P0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2:-:35661218..35663570

Molecular Weight (calculated)

42161.0 Da

IEP (calculated)

5.403

GRAVY (calculated)

-0.672

Length

370 amino acids

Sequence
(BLAST)

001: MESNCVQGKI FVGGISSETS EEVLTQHFSR YGEVVKSQVI KYRDTNCGKG FGFVTFADAS LIEQLIHQQH IILGRTVDVK LAIPKGASGQ CQLGSECPNF
101: QRQDSNNNRR KIFVGGLPLN LSEEEFKTYF EKFGTISQVN LISNKEIKTP RGFGFVTYDS EESVTHALQE KLHWLINKYV EVKKAEPRER RVINSNYHNF
201: YPGYGMWQIY DCNNEIFAPQ YCHNHTMVPT NWTSSFNHLG TNQFVHPQPI VPYFTPTYPV NYYGSTHRYP INCYCSTQNQ VDHNRGSYST FTQNNVINEE
301: NGQECNNIEV QLVGDGSLPA NESAKSLEKE TDNGGEKDDL KEILYDNTKE DNGEIDHLVK ILQVNSEDDT

Best Arabidopsis Sequence Match ( AT4G26650.1 )
(BLAST)

001: MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA

Arabidopsis Description

AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.