Factsheet for Solyc12g014210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039802	Potato	nucleus	73.73	55.38
GSMUA_Achr5P09550_001	Banana	nucleus	45.37	40.86
AT3G15010.2	Thale cress	nucleus	47.76	39.6
GSMUA_Achr5P09540_001	Banana	nucleus	45.67	39.43
CDY55846	Canola	nucleus	46.87	39.15
Bra039664.1-P	Field mustard	nucleus	48.06	38.8
CDY25867	Canola	nucleus	46.87	38.77
CDY26001	Canola	nucleus	46.87	38.57
CDY24106	Canola	nucleus	47.46	38.5
Bra038113.1-P	Field mustard	nucleus	46.87	37.92
VIT_19s0014g01570.t01	Wine grape	nucleus	50.75	37.86
KRH55109	Soybean	nucleus	47.76	36.04
KRH26210	Soybean	nucleus	46.87	35.93
Solyc02g021560.2.1	Tomato	nucleus	45.97	35.73
TraesCS3D01G232300.1	Wheat	nucleus	45.07	34.32
HORVU3Hr1G053990.1	Barley	nucleus	45.07	34.24
TraesCS3B01G250700.1	Wheat	golgi	44.78	34.09
TraesCS3A01G220400.1	Wheat	nucleus	44.78	34.09
Os01t0614500-01	Rice	nucleus	45.07	33.78
EES03272	Sorghum	nucleus	44.78	33.71
Zm00001d011336_P002	Maize	nucleus	45.07	33.71
Zm00001d044469_P003	Maize	nucleus	44.78	33.56
Solyc01g008970.2.1	Tomato	nucleus	31.04	27.66
Solyc10g081330.1.1	Tomato	nucleus	29.55	23.74
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	15.52	21.58
Solyc06g062740.1.1	Tomato	cytosol	12.54	21.32
Solyc04g011560.2.1	Tomato	nucleus	29.55	21.06
Solyc04g049920.2.1	Tomato	nucleus	14.63	20.33
Solyc02g082270.2.1	Tomato	nucleus	16.42	19.5
Solyc03g121710.2.1	Tomato	nucleus	14.63	18.22
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	13.73	17.62
Solyc04g074310.2.1	Tomato	nucleus	15.22	17.41
Solyc06g062730.1.1	Tomato	nucleus	15.52	14.17
Solyc04g014820.2.1	Tomato	cytosol	11.04	13.81
Solyc07g045240.2.1	Tomato	nucleus	13.43	13.12
Solyc09g072790.2.1	Tomato	nucleus	15.22	12.94
Solyc03g005680.2.1	Tomato	nucleus	15.82	12.41
Solyc02g093340.2.1	Tomato	nucleus	14.33	12.34
Solyc02g090910.2.1	Tomato	nucleus	13.73	12.23
Solyc04g077520.2.1	Tomato	nucleus	12.24	12.02
Solyc02g064540.1.1	Tomato	nucleus	12.84	11.62
Solyc09g090520.2.1	Tomato	nucleus	16.12	11.37
Solyc10g006050.2.1	Tomato	nucleus	11.34	8.78
Solyc12g014600.1.1	Tomato	nucleus	11.04	8.47
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	8.96	8.09
Solyc12g006180.1.1	Tomato	nucleus	9.85	7.53
Solyc11g012470.1.1	Tomato	nucleus	9.55	7.48
Solyc07g048030.2.1	Tomato	nucleus	9.55	7.32

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006950	GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000504	InterPro:IPR012677	UniProt:K4DCV6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
EnsemblPlantsGene:Solyc12g014210.1	EnsemblPlants:Solyc12g014210.1.1	TMHMM:TMhelix	UniParc:UPI000276A657	SEG:seg	:

Description

UBP1-associated protein 2C [Source:Projected from Arabidopsis thaliana (AT3G15010) UniProtKB/Swiss-Prot;Acc:Q9LKA4]

Coordinates

chr12:-:5054503..5055550

Molecular Weight (calculated)

37222.7 Da

IEP (calculated)

6.806

GRAVY (calculated)

0.025

Length

335 amino acids

Sequence
(BLAST)

001: MDQMKKRKLE DNGVGTDVPV ANRLSIEDGR KILESVTPEQ MVEILQNAVV RHPDVLDQVR EIVDRDPTKR KLFVRGLGWE TTTEKIRSIF GTFGELEEAV
101: VILDKNTGKS KGYGFVTFKH VDGALLALKQ PSKHVDGRVT VTQLASAGIQ GGPGGGSSNN PVDVSLRKIY VSNVPYDMQS ERILQHFLMY GEIEEGPLGF
201: DKATGKSKGY ALFVYKTAEA AQSSLVDPVK NIDGHQLNCK LEELRFKQMD MVIRWVLGNM VRLVVMVDFQ VILHMAGMDM VPIRHWVVEM VSVWVVLVVH
301: LMGTNLWVVG TVQGLVVHMV GGLIMVELVQ LDMAG

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.