Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25867 | Canola | nucleus | 93.52 | 92.59 |
| CDY26001 | Canola | nucleus | 86.03 | 84.77 |
| CDY24106 | Canola | nucleus | 85.04 | 82.57 |
| AT3G15010.2 | Thale cress | nucleus | 78.55 | 77.97 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 56.86 | 61.29 |
| KRH26210 | Soybean | nucleus | 65.59 | 60.18 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 66.83 | 59.69 |
| KRH55109 | Soybean | nucleus | 66.08 | 59.68 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 52.87 | 54.64 |
| PGSC0003DMT400039802 | Potato | nucleus | 57.36 | 51.57 |
| Solyc12g014210.1.1 | Tomato | nucleus | 39.15 | 46.87 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 50.37 | 45.8 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 49.88 | 45.45 |
| TraesCS3B01G250700.1 | Wheat | golgi | 49.88 | 45.45 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 49.88 | 45.45 |
| Os01t0614500-01 | Rice | nucleus | 49.88 | 44.74 |
| EES03272 | Sorghum | nucleus | 49.38 | 44.49 |
| Zm00001d011336_P002 | Maize | nucleus | 49.38 | 44.2 |
| Zm00001d044469_P003 | Maize | nucleus | 48.63 | 43.62 |
| PGSC0003DMT400032256 | Potato | nucleus | 27.93 | 35.9 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.98 | 35.71 |
| CDY51790 | Canola | cytosol | 9.48 | 35.51 |
| PGSC0003DMT400031324 | Potato | cytosol | 11.72 | 33.81 |
| CDX76015 | Canola | nucleus | 23.44 | 30.82 |
| CDY27186 | Canola | nucleus | 34.41 | 30.73 |
| CDX72106 | Canola | nucleus | 34.66 | 30.55 |
| CDY06947 | Canola | nucleus | 32.42 | 30.23 |
| CDY57580 | Canola | nucleus | 32.92 | 29.8 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 26.68 | 29.4 |
| CDX76950 | Canola | nucleus | 21.45 | 27.92 |
| CDY13782 | Canola | nucleus | 20.95 | 27.36 |
| CDY33653 | Canola | nucleus | 17.21 | 27.27 |
| CDX96615 | Canola | nucleus | 16.71 | 26.59 |
| CDY31859 | Canola | nucleus | 15.96 | 26.56 |
| CDY31508 | Canola | nucleus | 16.46 | 26.4 |
| CDY29496 | Canola | nucleus | 16.71 | 25.67 |
| CDY01349 | Canola | nucleus | 15.21 | 25.31 |
| CDX73279 | Canola | cytosol | 14.96 | 24.79 |
| CDX88283 | Canola | nucleus | 16.46 | 23.57 |
| CDY02889 | Canola | nucleus | 12.72 | 23.5 |
| CDY26229 | Canola | nucleus | 21.2 | 22.91 |
| CDY48318 | Canola | nucleus | 21.2 | 22.85 |
| CDY64698 | Canola | nucleus | 14.21 | 21.84 |
| CDX88432 | Canola | nucleus | 15.46 | 21.83 |
| CDX87460 | Canola | nucleus | 15.46 | 21.75 |
| CDX78261 | Canola | nucleus | 13.97 | 21.62 |
| CDX73451 | Canola | cytosol | 13.47 | 21.6 |
| CDX75170 | Canola | extracellular | 8.73 | 21.47 |
| CDX79253 | Canola | nucleus | 14.96 | 21.43 |
| CDY21356 | Canola | nucleus | 15.46 | 21.38 |
| CDY17173 | Canola | nucleus | 19.95 | 21.22 |
| CDY47382 | Canola | golgi, plastid | 21.95 | 21.15 |
| CDY69197 | Canola | nucleus | 11.72 | 20.89 |
| CDY15850 | Canola | nucleus | 19.2 | 20.81 |
| CDY67299 | Canola | nucleus | 19.7 | 20.73 |
| CDY04769 | Canola | nucleus | 12.22 | 20.68 |
| CDX87594 | Canola | nucleus | 16.46 | 20.62 |
| CDX68024 | Canola | nucleus | 14.46 | 20.49 |
| CDY25759 | Canola | nucleus | 12.72 | 20.48 |
| CDX90262 | Canola | nucleus | 19.45 | 20.42 |
| CDY46642 | Canola | nucleus | 14.71 | 20.42 |
| CDY24201 | Canola | nucleus | 18.2 | 20.17 |
| CDY43360 | Canola | nucleus | 18.2 | 20.17 |
| CDY12068 | Canola | nucleus | 17.96 | 20.11 |
| CDY41556 | Canola | nucleus | 14.46 | 20.0 |
| CDY37724 | Canola | nucleus | 15.96 | 19.81 |
| CDY23739 | Canola | nucleus | 18.45 | 19.32 |
| CDX79527 | Canola | nucleus | 19.45 | 19.21 |
| CDY69852 | Canola | cytosol | 18.2 | 19.11 |
| CDY42724 | Canola | cytosol | 17.96 | 19.0 |
| CDX84689 | Canola | nucleus | 19.2 | 18.87 |
| CDX80046 | Canola | nucleus | 14.71 | 18.67 |
| CDY41557 | Canola | nucleus | 14.71 | 18.67 |
| CDY48016 | Canola | nucleus | 14.46 | 17.79 |
| CDY27523 | Canola | nucleus | 14.21 | 17.65 |
| CDY00446 | Canola | nucleus | 14.71 | 17.35 |
| CDY50131 | Canola | nucleus | 16.21 | 17.02 |
| CDY07975 | Canola | nucleus | 19.7 | 16.77 |
| CDY66272 | Canola | nucleus | 20.45 | 16.77 |
| CDX74030 | Canola | nucleus | 19.7 | 16.74 |
| CDY22136 | Canola | nucleus | 20.2 | 16.67 |
| CDY35966 | Canola | nucleus | 20.45 | 16.6 |
| CDY67263 | Canola | nucleus | 13.22 | 16.16 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.46 | 16.06 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.72 | 15.9 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 14.21 | 15.7 |
| CDY05301 | Canola | nucleus | 13.72 | 15.67 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.21 | 15.66 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 14.21 | 15.66 |
| CDX94301 | Canola | nucleus | 17.21 | 15.61 |
| CDY24657 | Canola | nucleus | 13.22 | 15.59 |
| CDY42577 | Canola | nucleus | 20.95 | 15.41 |
| CDY36357 | Canola | nucleus | 20.7 | 15.31 |
| CDX77783 | Canola | nucleus | 16.21 | 15.29 |
| CDX92807 | Canola | nucleus | 16.96 | 15.11 |
| CDX89316 | Canola | endoplasmic reticulum | 16.71 | 14.99 |
| CDY41059 | Canola | nucleus | 15.96 | 14.99 |
| CDY46690 | Canola | nucleus | 15.96 | 14.95 |
| CDX69279 | Canola | nucleus | 8.73 | 14.83 |
| CDY36753 | Canola | nucleus | 15.96 | 14.71 |
| CDY46689 | Canola | nucleus | 16.96 | 14.69 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 13.22 | 14.6 |
| CDY11989 | Canola | nucleus | 15.71 | 14.58 |
| CDY08023 | Canola | nucleus | 11.97 | 13.33 |
| CDY28918 | Canola | mitochondrion | 15.96 | 13.22 |
| CDX74070 | Canola | cytosol | 11.47 | 12.78 |
| CDY13339 | Canola | mitochondrion | 4.99 | 11.9 |
| CDY25957 | Canola | nucleus | 16.21 | 11.75 |
| CDX69277 | Canola | mitochondrion | 4.74 | 10.22 |
| CDY40554 | Canola | nucleus | 15.96 | 9.76 |
| CDY21399 | Canola | mitochondrion | 2.74 | 7.59 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078J1H4 | UniProt:A0A078J1H4 | EnsemblPlants:CDY55846 | ProteinID:CDY55846 |
| ProteinID:CDY55846.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00017391001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 |
| PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDDE66 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng29340DBnaCnng29340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1H4]
Coordinates
chrLK033433:-:34107..36371
Molecular Weight (calculated)
41255.7 Da
IEP (calculated)
8.361
GRAVY (calculated)
-0.377
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVLKKRRLD ENGIGLLNDG HITTRLTPHD ARKIIERFSN DQLLDILQEA VARHPDVLEL VRSTADSDVS QRKLFIRGLA AETTTEGLRS LFSTYGDLEE
101: AIVILDKVTA KSKGYGFVTF KHVDGALLAL KDPSKKIDGR VTVTQLAAAG NQGTTAHVSD ISTRKIYVAN VPFDMPADRL LNQFLAYGDI EEGPLGFDKV
201: TGKSRGFALF VYKTSEGAQA ALADPTKVVD GKHLQCKLAI DGKKGKPPGQ DGGVAGPGGH GHGDGMGMVP PPGPYAVGHG GPGGMGPYGG YSGGPPPHHM
301: NSTPSSIGGG AYAGHYSGYG GAGSGGYGSM GGAGGGYGGP GAGSGPYRMP PSSMSGGGYP ESGHYGHSSA SAYPGQHPAV GSSAVPRVPL GGMYPNGPPN
401: Y
101: AIVILDKVTA KSKGYGFVTF KHVDGALLAL KDPSKKIDGR VTVTQLAAAG NQGTTAHVSD ISTRKIYVAN VPFDMPADRL LNQFLAYGDI EEGPLGFDKV
201: TGKSRGFALF VYKTSEGAQA ALADPTKVVD GKHLQCKLAI DGKKGKPPGQ DGGVAGPGGH GHGDGMGMVP PPGPYAVGHG GPGGMGPYGG YSGGPPPHHM
301: NSTPSSIGGG AYAGHYSGYG GAGSGGYGSM GGAGGGYGGP GAGSGPYRMP PSSMSGGGYP ESGHYGHSSA SAYPGQHPAV GSSAVPRVPL GGMYPNGPPN
401: Y
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.