Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22090.2 | CDX76950 | AT2G22090.2 | 12024044 |
| AT2G22090.2 | CDY13782 | AT2G22090.2 | 12024044 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031230.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| CDX76950 | Canola | nucleus | 93.49 | 93.18 |
| AT2G22090.2 | Thale cress | nucleus | 81.11 | 71.76 |
| CDY51790 | Canola | cytosol | 13.36 | 38.32 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.36 | 36.61 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 37.78 | 29.59 |
| CDX76015 | Canola | nucleus | 26.71 | 26.89 |
| Solyc04g011560.2.1 | Tomato | nucleus | 39.74 | 25.96 |
| PGSC0003DMT400016249 | Potato | nucleus | 40.39 | 25.2 |
| CDY15850 | Canola | nucleus | 28.99 | 24.05 |
| CDY27186 | Canola | nucleus | 31.6 | 21.6 |
| CDY06947 | Canola | nucleus | 29.64 | 21.16 |
| CDY31859 | Canola | nucleus | 16.61 | 21.16 |
| CDX72106 | Canola | nucleus | 31.27 | 21.1 |
| CDY33653 | Canola | nucleus | 17.26 | 20.95 |
| CDY55846 | Canola | nucleus | 27.36 | 20.95 |
| CDY01349 | Canola | nucleus | 16.29 | 20.75 |
| CDY25867 | Canola | nucleus | 27.36 | 20.74 |
| CDY47382 | Canola | golgi, plastid | 28.01 | 20.67 |
| CDY24106 | Canola | nucleus | 27.69 | 20.58 |
| CDY57580 | Canola | nucleus | 29.64 | 20.54 |
| CDY31508 | Canola | nucleus | 16.61 | 20.4 |
| CDY26001 | Canola | nucleus | 27.04 | 20.39 |
| CDX96615 | Canola | nucleus | 16.29 | 19.84 |
| CDY69197 | Canola | nucleus | 14.33 | 19.56 |
| CDY29496 | Canola | nucleus | 16.61 | 19.54 |
| CDX73279 | Canola | cytosol | 14.98 | 19.01 |
| CDY04769 | Canola | nucleus | 14.66 | 18.99 |
| CDY25759 | Canola | nucleus | 14.33 | 17.67 |
| CDX88432 | Canola | nucleus | 16.29 | 17.61 |
| CDX87460 | Canola | nucleus | 16.29 | 17.54 |
| CDX88283 | Canola | nucleus | 15.96 | 17.5 |
| CDX79253 | Canola | nucleus | 14.98 | 16.43 |
| CDY46642 | Canola | nucleus | 15.31 | 16.26 |
| CDY21356 | Canola | nucleus | 15.31 | 16.21 |
| CDY41556 | Canola | nucleus | 15.31 | 16.21 |
| CDX68024 | Canola | nucleus | 14.66 | 15.9 |
| CDY02889 | Canola | nucleus | 11.07 | 15.67 |
| CDY26229 | Canola | nucleus | 18.89 | 15.63 |
| CDX87594 | Canola | nucleus | 16.29 | 15.62 |
| CDY48318 | Canola | nucleus | 18.89 | 15.59 |
| CDX73451 | Canola | cytosol | 12.38 | 15.2 |
| CDY64698 | Canola | nucleus | 12.7 | 14.94 |
| CDX80046 | Canola | nucleus | 15.31 | 14.87 |
| CDY41557 | Canola | nucleus | 15.31 | 14.87 |
| CDX78261 | Canola | nucleus | 12.38 | 14.67 |
| CDY67263 | Canola | nucleus | 15.31 | 14.33 |
| CDY27523 | Canola | nucleus | 14.98 | 14.24 |
| CDY48016 | Canola | nucleus | 14.98 | 14.11 |
| CDY00446 | Canola | nucleus | 15.31 | 13.82 |
| CDY37724 | Canola | nucleus | 14.01 | 13.31 |
| CDY17173 | Canola | nucleus | 15.64 | 12.73 |
| CDY23739 | Canola | nucleus | 15.64 | 12.53 |
| CDY67299 | Canola | nucleus | 15.31 | 12.34 |
| CDY12068 | Canola | nucleus | 14.33 | 12.29 |
| CDY42724 | Canola | cytosol | 14.98 | 12.14 |
| CDX79527 | Canola | nucleus | 15.96 | 12.07 |
| CDX90262 | Canola | nucleus | 14.98 | 12.04 |
| CDY50131 | Canola | nucleus | 14.98 | 12.04 |
| CDX84689 | Canola | nucleus | 15.96 | 12.01 |
| CDY05301 | Canola | nucleus | 13.68 | 11.97 |
| CDY69852 | Canola | cytosol | 14.66 | 11.78 |
| CDY24657 | Canola | nucleus | 13.03 | 11.76 |
| CDY43360 | Canola | nucleus | 13.68 | 11.6 |
| CDY24201 | Canola | nucleus | 13.68 | 11.6 |
| CDX74070 | Canola | cytosol | 13.36 | 11.39 |
| CDY08023 | Canola | nucleus | 13.03 | 11.11 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 14.98 | 11.08 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 14.66 | 10.95 |
| CDX94301 | Canola | nucleus | 15.64 | 10.86 |
| CDY07975 | Canola | nucleus | 16.61 | 10.83 |
| CDX74030 | Canola | nucleus | 16.61 | 10.81 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.7 | 10.74 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.7 | 10.71 |
| CDX77783 | Canola | nucleus | 14.66 | 10.59 |
| CDY22136 | Canola | nucleus | 16.61 | 10.49 |
| CDY66272 | Canola | nucleus | 16.61 | 10.43 |
| CDY35966 | Canola | nucleus | 16.61 | 10.32 |
| CDX69279 | Canola | nucleus | 7.82 | 10.17 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 11.4 | 10.12 |
| CDY41059 | Canola | nucleus | 14.01 | 10.07 |
| CDX89316 | Canola | endoplasmic reticulum | 14.66 | 10.07 |
| CDX92807 | Canola | nucleus | 14.33 | 9.78 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.4 | 9.64 |
| CDY46689 | Canola | nucleus | 14.33 | 9.5 |
| CDY46690 | Canola | nucleus | 13.03 | 9.35 |
| CDY28918 | Canola | mitochondrion | 14.66 | 9.3 |
| CDY11989 | Canola | nucleus | 13.03 | 9.26 |
| CDY36753 | Canola | nucleus | 12.7 | 8.97 |
| CDY36357 | Canola | nucleus | 15.64 | 8.86 |
| CDY42577 | Canola | nucleus | 15.64 | 8.81 |
| CDX75170 | Canola | extracellular | 4.56 | 8.59 |
| CDY25957 | Canola | nucleus | 14.33 | 7.96 |
| CDY40554 | Canola | nucleus | 15.31 | 7.16 |
| CDY13339 | Canola | mitochondrion | 2.61 | 4.76 |
| CDY21399 | Canola | mitochondrion | 1.63 | 3.45 |
| CDX69277 | Canola | mitochondrion | 1.95 | 3.23 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FLA9 | UniProt:A0A078FLA9 | EnsemblPlants:CDY13782 | ProteinID:CDY13782 |
| ProteinID:CDY13782.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00078218001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 |
| PANTHER:PTHR44578:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDB9EC |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g42840DBnaA09g42840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLA9]
Coordinates
chrLK032038:+:331544..333249
Molecular Weight (calculated)
32524.1 Da
IEP (calculated)
8.403
GRAVY (calculated)
-0.547
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLDKSKK RKFVKSDKTN KKQKTNQPES STTPYSTSSS SSDSSDSESE QEFDPEELRD LLQPYSKDQL VDLLCSSPQI GSSIYSSVLE AADRDVTHRK
101: IFVYGLPWET TRETLSGVFE GFGEIEECTV VIDKNTGKAK GFGFVTFTSR RGAREALKEP KKRILSRTAT CQLAAMGPAG SGKGQEQTGP VKISLGQAQQ
201: QQQVFNGGGM AAATPFMIGN QFHPVYGGGM MANPALAVAA GGGGYMYPML ASALGQMGGI GDPGALGAYF RGGQSLPSAY SDSDTGRKGS GKDSEAAGGS
301: FQGYANY
101: IFVYGLPWET TRETLSGVFE GFGEIEECTV VIDKNTGKAK GFGFVTFTSR RGAREALKEP KKRILSRTAT CQLAAMGPAG SGKGQEQTGP VKISLGQAQQ
201: QQQVFNGGGM AAATPFMIGN QFHPVYGGGM MANPALAVAA GGGGYMYPML ASALGQMGGI GDPGALGAYF RGGQSLPSAY SDSDTGRKGS GKDSEAAGGS
301: FQGYANY
001: MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS
Arabidopsis Description
UBA1ARNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.