Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22090.2 | CDX76950 | AT2G22090.2 | 12024044 |
| AT2G22090.2 | CDY13782 | AT2G22090.2 | 12024044 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13782 | Canola | nucleus | 93.18 | 93.49 |
| AT2G22090.2 | Thale cress | nucleus | 85.06 | 75.5 |
| CDY51790 | Canola | cytosol | 13.31 | 38.32 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.31 | 36.61 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 38.96 | 30.61 |
| Solyc04g011560.2.1 | Tomato | nucleus | 39.61 | 25.96 |
| CDX76015 | Canola | nucleus | 25.65 | 25.9 |
| PGSC0003DMT400016249 | Potato | nucleus | 39.94 | 25.0 |
| CDY15850 | Canola | nucleus | 29.87 | 24.86 |
| CDY31859 | Canola | nucleus | 16.88 | 21.58 |
| CDY55846 | Canola | nucleus | 27.92 | 21.45 |
| CDY27186 | Canola | nucleus | 31.17 | 21.38 |
| CDY33653 | Canola | nucleus | 17.53 | 21.34 |
| CDY25867 | Canola | nucleus | 27.92 | 21.23 |
| CDY01349 | Canola | nucleus | 16.56 | 21.16 |
| CDY06947 | Canola | nucleus | 29.22 | 20.93 |
| CDX72106 | Canola | nucleus | 30.84 | 20.88 |
| CDY24106 | Canola | nucleus | 27.92 | 20.82 |
| CDY26001 | Canola | nucleus | 27.27 | 20.64 |
| CDY57580 | Canola | nucleus | 29.55 | 20.54 |
| CDY47382 | Canola | golgi, plastid | 27.6 | 20.43 |
| CDX96615 | Canola | nucleus | 16.56 | 20.24 |
| CDY31508 | Canola | nucleus | 16.23 | 20.0 |
| CDY69197 | Canola | nucleus | 14.29 | 19.56 |
| CDY29496 | Canola | nucleus | 16.23 | 19.16 |
| CDY04769 | Canola | nucleus | 14.61 | 18.99 |
| CDX73279 | Canola | cytosol | 14.61 | 18.59 |
| CDX88283 | Canola | nucleus | 16.23 | 17.86 |
| CDY25759 | Canola | nucleus | 14.29 | 17.67 |
| CDX88432 | Canola | nucleus | 15.58 | 16.9 |
| CDX87460 | Canola | nucleus | 15.58 | 16.84 |
| CDY02889 | Canola | nucleus | 11.69 | 16.59 |
| CDY41556 | Canola | nucleus | 15.26 | 16.21 |
| CDX79253 | Canola | nucleus | 14.61 | 16.07 |
| CDX73451 | Canola | cytosol | 12.99 | 16.0 |
| CDY46642 | Canola | nucleus | 14.94 | 15.92 |
| CDY21356 | Canola | nucleus | 14.94 | 15.86 |
| CDY64698 | Canola | nucleus | 13.31 | 15.71 |
| CDX68024 | Canola | nucleus | 14.29 | 15.55 |
| CDX78261 | Canola | nucleus | 12.99 | 15.44 |
| CDY26229 | Canola | nucleus | 18.51 | 15.36 |
| CDY48318 | Canola | nucleus | 18.51 | 15.32 |
| CDX87594 | Canola | nucleus | 15.91 | 15.31 |
| CDY41557 | Canola | nucleus | 15.26 | 14.87 |
| CDX80046 | Canola | nucleus | 15.26 | 14.87 |
| CDY67263 | Canola | nucleus | 15.26 | 14.33 |
| CDY27523 | Canola | nucleus | 14.61 | 13.93 |
| CDY37724 | Canola | nucleus | 14.61 | 13.93 |
| CDY48016 | Canola | nucleus | 14.61 | 13.8 |
| CDY00446 | Canola | nucleus | 14.94 | 13.53 |
| CDY23739 | Canola | nucleus | 16.23 | 13.05 |
| CDY17173 | Canola | nucleus | 15.58 | 12.73 |
| CDX79527 | Canola | nucleus | 16.56 | 12.56 |
| CDX84689 | Canola | nucleus | 16.56 | 12.5 |
| CDY67299 | Canola | nucleus | 15.26 | 12.34 |
| CDY12068 | Canola | nucleus | 14.29 | 12.29 |
| CDX90262 | Canola | nucleus | 14.94 | 12.04 |
| CDY50131 | Canola | nucleus | 14.94 | 12.04 |
| CDY05301 | Canola | nucleus | 13.64 | 11.97 |
| CDY43360 | Canola | nucleus | 13.96 | 11.88 |
| CDY24201 | Canola | nucleus | 13.96 | 11.88 |
| CDY24657 | Canola | nucleus | 12.99 | 11.76 |
| CDY42724 | Canola | cytosol | 14.29 | 11.61 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 13.31 | 11.29 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.31 | 11.26 |
| CDY69852 | Canola | cytosol | 13.96 | 11.26 |
| CDX74070 | Canola | cytosol | 12.99 | 11.11 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 14.61 | 10.95 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 14.61 | 10.84 |
| CDY08023 | Canola | nucleus | 12.66 | 10.83 |
| CDY07975 | Canola | nucleus | 16.56 | 10.83 |
| CDX74030 | Canola | nucleus | 16.56 | 10.81 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 12.01 | 10.69 |
| CDX94301 | Canola | nucleus | 15.26 | 10.63 |
| CDY22136 | Canola | nucleus | 16.56 | 10.49 |
| CDX77783 | Canola | nucleus | 14.29 | 10.35 |
| CDY35966 | Canola | nucleus | 16.56 | 10.32 |
| CDY66272 | Canola | nucleus | 16.23 | 10.22 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.01 | 10.19 |
| CDX92807 | Canola | nucleus | 14.61 | 10.0 |
| CDX89316 | Canola | endoplasmic reticulum | 14.29 | 9.84 |
| CDY41059 | Canola | nucleus | 13.64 | 9.84 |
| CDX69279 | Canola | nucleus | 7.47 | 9.75 |
| CDY46689 | Canola | nucleus | 14.61 | 9.72 |
| CDY46690 | Canola | nucleus | 13.31 | 9.58 |
| CDY11989 | Canola | nucleus | 13.31 | 9.49 |
| CDY36753 | Canola | nucleus | 12.99 | 9.2 |
| CDY28918 | Canola | mitochondrion | 14.29 | 9.09 |
| CDY36357 | Canola | nucleus | 15.91 | 9.04 |
| CDY42577 | Canola | nucleus | 15.91 | 8.99 |
| CDX75170 | Canola | extracellular | 4.55 | 8.59 |
| CDY25957 | Canola | nucleus | 13.96 | 7.78 |
| CDY40554 | Canola | nucleus | 14.94 | 7.01 |
| CDY13339 | Canola | mitochondrion | 2.6 | 4.76 |
| CDY21399 | Canola | mitochondrion | 1.62 | 3.45 |
| CDX69277 | Canola | mitochondrion | 1.95 | 3.23 |
Protein Annotations
| EnsemblPlants:CDX76950 | EnsemblPlantsGene:GSBRNA2T00127490001 | Gene3D:3.30.70.330 | GO:A0A078CJ79 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44578 | PANTHER:PTHR44578:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX76950 | ProteinID:CDX76950.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF08A7 | MapMan:35.1 | : |
Description
BnaC08g35360D
Coordinates
chrLK031808:+:2246451..2248225
Molecular Weight (calculated)
32729.3 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.636
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLDKSKK RKFVKSENKN KKQKTNQPES STTPYSTSSS SSDSSDSESE QEFDPEELRE LLQPYSKDQL VDLLCSSPRI GSSIYSAVLE AADRDVTHRK
101: IFVYGLPWET TRETLSGVFE GYGEIEECTV VIDKNTGKAK GFGFVTFKSR RGAREALKEP KKRILNRTAT CQLAAMGPAG SGKGQDQAGP VKISLGQPQQ
201: QQQVFNGGGM AASPFMIGNQ YHPVYGGGMM ANPALAAAAA AGGGGYMYPM LASALGQMGG IGDPGALGPY FRGGQSLPSA YSDSDTGRKG NGKDSEAGGG
301: SFQGYSNY
101: IFVYGLPWET TRETLSGVFE GYGEIEECTV VIDKNTGKAK GFGFVTFKSR RGAREALKEP KKRILNRTAT CQLAAMGPAG SGKGQDQAGP VKISLGQPQQ
201: QQQVFNGGGM AASPFMIGNQ YHPVYGGGMM ANPALAAAAA AGGGGYMYPM LASALGQMGG IGDPGALGPY FRGGQSLPSA YSDSDTGRKG NGKDSEAGGG
301: SFQGYSNY
001: MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS
101: VTHRKIFVYG LPWETTRETL VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS MGPAASGKGH DQPGPVKISM
201: GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA
301: LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS
Arabidopsis Description
UBA1ARNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4IIL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.