Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26229 | Canola | nucleus | 96.77 | 97.03 |
| AT1G17640.1 | Thale cress | nucleus | 85.48 | 86.18 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 38.44 | 48.97 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 44.09 | 48.66 |
| Solyc03g121710.2.1 | Tomato | nucleus | 33.87 | 46.84 |
| GSMUA_Achr10P... | Banana | nucleus | 41.4 | 46.25 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 43.55 | 45.89 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 48.39 | 44.89 |
| EES06526 | Sorghum | nucleus | 47.04 | 44.76 |
| Zm00001d016349_P002 | Maize | nucleus | 45.97 | 44.53 |
| KRH23293 | Soybean | nucleus | 42.2 | 44.48 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 45.16 | 44.44 |
| Os02t0221500-01 | Rice | nucleus | 47.04 | 44.08 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 46.51 | 43.36 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 46.77 | 42.13 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 46.24 | 42.05 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 46.77 | 42.03 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 46.51 | 41.89 |
| Zm00001d046190_P001 | Maize | extracellular | 46.24 | 41.15 |
| EER88542 | Sorghum | nucleus | 45.7 | 41.06 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 46.51 | 38.96 |
| Solyc06g062740.1.1 | Tomato | cytosol | 20.43 | 38.58 |
| PGSC0003DMT400012372 | Potato | nucleus | 30.65 | 38.38 |
| PGSC0003DMT400006638 | Potato | nucleus | 39.78 | 38.34 |
| CDY24201 | Canola | nucleus | 36.83 | 37.85 |
| CDY43360 | Canola | nucleus | 36.29 | 37.29 |
| HORVU6Hr1G040220.5 | Barley | plastid | 46.51 | 37.28 |
| CDY12068 | Canola | nucleus | 31.18 | 32.4 |
| CDY67299 | Canola | nucleus | 33.06 | 32.28 |
| Solyc06g062730.1.1 | Tomato | nucleus | 31.72 | 32.15 |
| CDY17173 | Canola | nucleus | 32.26 | 31.83 |
| CDY23739 | Canola | nucleus | 32.53 | 31.59 |
| PGSC0003DMT400012369 | Potato | nucleus | 37.1 | 31.58 |
| Zm00001d053572_P002 | Maize | cytosol | 46.24 | 31.33 |
| CDX84689 | Canola | nucleus | 34.14 | 31.13 |
| CDX90262 | Canola | nucleus | 31.72 | 30.89 |
| CDX79527 | Canola | nucleus | 33.6 | 30.79 |
| CDX75170 | Canola | extracellular | 13.44 | 30.67 |
| CDY51790 | Canola | cytosol | 8.6 | 29.91 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.87 | 29.46 |
| CDY37724 | Canola | nucleus | 25.27 | 29.1 |
| CDY36357 | Canola | nucleus | 41.4 | 28.41 |
| CDY42577 | Canola | nucleus | 40.86 | 27.89 |
| CDY50131 | Canola | nucleus | 27.69 | 26.96 |
| CDY41059 | Canola | nucleus | 30.65 | 26.7 |
| CDX77783 | Canola | nucleus | 30.11 | 26.35 |
| CDX74030 | Canola | nucleus | 33.33 | 26.27 |
| CDY07975 | Canola | nucleus | 33.06 | 26.11 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 29.03 | 26.02 |
| CDX94301 | Canola | nucleus | 30.38 | 25.57 |
| CDY22136 | Canola | nucleus | 33.06 | 25.31 |
| CDY35966 | Canola | nucleus | 33.6 | 25.3 |
| CDY46690 | Canola | nucleus | 29.03 | 25.23 |
| CDY66272 | Canola | nucleus | 33.06 | 25.15 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 27.69 | 25.06 |
| CDX92807 | Canola | nucleus | 30.11 | 24.89 |
| CDY69852 | Canola | cytosol | 25.27 | 24.61 |
| CDY42724 | Canola | cytosol | 25.0 | 24.54 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.92 | 24.45 |
| CDX89316 | Canola | endoplasmic reticulum | 29.3 | 24.38 |
| CDY11989 | Canola | nucleus | 28.23 | 24.31 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 23.66 | 24.24 |
| CDY46689 | Canola | nucleus | 30.11 | 24.19 |
| CDY36753 | Canola | nucleus | 28.23 | 24.14 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.31 | 23.99 |
| CDY31859 | Canola | nucleus | 15.32 | 23.65 |
| CDY28918 | Canola | mitochondrion | 29.84 | 22.93 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.31 | 22.86 |
| CDX73279 | Canola | cytosol | 14.78 | 22.73 |
| CDY01349 | Canola | nucleus | 14.52 | 22.41 |
| CDX69279 | Canola | nucleus | 13.98 | 22.03 |
| CDY31508 | Canola | nucleus | 14.52 | 21.6 |
| CDY33653 | Canola | nucleus | 14.52 | 21.34 |
| CDY69197 | Canola | nucleus | 12.9 | 21.33 |
| CDY55846 | Canola | nucleus | 22.85 | 21.2 |
| CDX96615 | Canola | nucleus | 14.25 | 21.03 |
| CDY29496 | Canola | nucleus | 14.52 | 20.69 |
| CDY04769 | Canola | nucleus | 13.17 | 20.68 |
| CDY25957 | Canola | nucleus | 30.65 | 20.61 |
| CDY25867 | Canola | nucleus | 22.04 | 20.25 |
| CDY26001 | Canola | nucleus | 22.04 | 20.15 |
| CDX88283 | Canola | nucleus | 15.05 | 20.0 |
| CDY24106 | Canola | nucleus | 22.04 | 19.85 |
| CDX73451 | Canola | cytosol | 13.17 | 19.6 |
| CDY02889 | Canola | nucleus | 11.29 | 19.35 |
| CDY41556 | Canola | nucleus | 15.05 | 19.31 |
| CDY25759 | Canola | nucleus | 12.9 | 19.28 |
| CDY13782 | Canola | nucleus | 15.59 | 18.89 |
| CDX76950 | Canola | nucleus | 15.32 | 18.51 |
| CDX88432 | Canola | nucleus | 13.98 | 18.31 |
| CDX87460 | Canola | nucleus | 13.98 | 18.25 |
| CDX78261 | Canola | nucleus | 12.63 | 18.15 |
| CDX68024 | Canola | nucleus | 13.71 | 18.02 |
| CDX79253 | Canola | nucleus | 13.44 | 17.86 |
| CDX87594 | Canola | nucleus | 15.32 | 17.81 |
| CDX80046 | Canola | nucleus | 15.05 | 17.72 |
| CDY41557 | Canola | nucleus | 15.05 | 17.72 |
| CDY27523 | Canola | nucleus | 15.32 | 17.65 |
| CDY46642 | Canola | nucleus | 13.71 | 17.65 |
| CDY64698 | Canola | nucleus | 12.37 | 17.62 |
| CDY48016 | Canola | nucleus | 15.32 | 17.48 |
| CDX76015 | Canola | nucleus | 14.25 | 17.38 |
| CDY21356 | Canola | nucleus | 13.17 | 16.9 |
| CDY40554 | Canola | nucleus | 29.57 | 16.77 |
| CDY06947 | Canola | nucleus | 19.09 | 16.51 |
| CDY27186 | Canola | nucleus | 19.89 | 16.48 |
| CDX72106 | Canola | nucleus | 19.89 | 16.26 |
| CDY57580 | Canola | nucleus | 19.09 | 16.03 |
| CDX69277 | Canola | mitochondrion | 7.8 | 15.59 |
| CDY67263 | Canola | nucleus | 13.71 | 15.55 |
| CDY00446 | Canola | nucleus | 13.44 | 14.71 |
| CDY13339 | Canola | mitochondrion | 6.18 | 13.69 |
| CDY08023 | Canola | nucleus | 12.9 | 13.33 |
| CDY15850 | Canola | nucleus | 13.17 | 13.24 |
| CDX74070 | Canola | cytosol | 12.63 | 13.06 |
| CDY05301 | Canola | nucleus | 11.83 | 12.54 |
| CDY21399 | Canola | mitochondrion | 4.84 | 12.41 |
| CDY24657 | Canola | nucleus | 11.02 | 12.06 |
| CDY47382 | Canola | golgi, plastid | 13.17 | 11.78 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IGM5 | UniProt:A0A078IGM5 | EnsemblPlants:CDY48318 | ProteinID:CDY48318 |
| ProteinID:CDY48318.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00089286001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EBDB25 | SEG:seg |
Description
BnaC05g13720DBnaC05g13720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGM5]
Coordinates
chrLK032765:-:124317..126221
Molecular Weight (calculated)
40253.2 Da
IEP (calculated)
5.936
GRAVY (calculated)
-0.735
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYNSGRGYG DDSYHRHLQE EQLPPSDYVV ETVDDRSNGG AAAVDTGGMQ MKPSSVHRHS SSSMCSPGKL FVGGVSWETT EENFGKYFEK FGEVVDSVIM
101: RDRMTGKPRG FGFVTFADSA VAEKVLEEEE HVIDDRKVDL KRTVPRGDRD TDTKAVSKTR KIFVGGLPPF LEEDELKKYF CVYGDIIEHQ IVYDHHTGRS
201: RGFGFVTFLA EDSVDRLFSD GKVHELGDKQ VDIKRAEPKR AGRDNSFRSY GASGKYDQED CYGGNANEDY NMYGGYGGYG AYAGNSMVNA AAGFYGYGGG
301: YGYGYGYGYG GQMFNPGYGA GGYSHMGGGY GVAAAAAYGG GKAHGDGNSG SSSGRGNGSN GIGPGRYHPY QK
101: RDRMTGKPRG FGFVTFADSA VAEKVLEEEE HVIDDRKVDL KRTVPRGDRD TDTKAVSKTR KIFVGGLPPF LEEDELKKYF CVYGDIIEHQ IVYDHHTGRS
201: RGFGFVTFLA EDSVDRLFSD GKVHELGDKQ VDIKRAEPKR AGRDNSFRSY GASGKYDQED CYGGNANEDY NMYGGYGGYG AYAGNSMVNA AAGFYGYGGG
301: YGYGYGYGYG GQMFNPGYGA GGYSHMGGGY GVAAAAAYGG GKAHGDGNSG SSSGRGNGSN GIGPGRYHPY QK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.