Factsheet for Zm00001d053572_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06526	Sorghum	nucleus	66.67	93.61
Zm00001d016349_P002	Maize	nucleus	63.75	91.15
Os02t0221500-01	Rice	nucleus	58.65	81.11
TraesCS6D01G173900.1	Wheat	nucleus	58.83	78.97
TraesCS6A01G187000.1	Wheat	nucleus	58.47	77.72
TraesCS6B01G217500.1	Wheat	nucleus	58.29	77.29
HORVU6Hr1G040220.5	Barley	plastid	60.66	71.77
Zm00001d036966_P001	Maize	nucleus, plasma membrane	49.54	65.86
Zm00001d046190_P001	Maize	extracellular	49.0	64.35
GSMUA_Achr7P13480_001	Banana	nucleus	38.8	63.2
GSMUA_Achr10P...	Banana	nucleus	36.98	60.96
Solyc03g121710.2.1	Tomato	nucleus	26.59	54.28
VIT_09s0002g02350.t01	Wine grape	cytosol	32.6	50.71
PGSC0003DMT400006638	Potato	nucleus	33.7	47.93
CDY26229	Canola	nucleus	31.33	46.36
CDY48318	Canola	nucleus	31.33	46.24
AT1G17640.1	Thale cress	nucleus	30.78	45.8
KRH23293	Soybean	nucleus	28.6	44.48
Zm00001d030579_P001	Maize	mitochondrion	27.87	43.97
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	28.6	40.99
Solyc06g062740.1.1	Tomato	cytosol	14.57	40.61
PGSC0003DMT400012372	Potato	nucleus	20.77	38.38
PGSC0003DMT400012369	Potato	nucleus	25.68	32.27
Solyc06g062730.1.1	Tomato	nucleus	21.13	31.61
Zm00001d032739_P001	Maize	nucleus	24.95	30.93
Zm00001d014058_P002	Maize	plastid	25.68	29.25
Zm00001d034200_P001	Maize	nucleus	8.93	28.66
Zm00001d034201_P001	Maize	nucleus	12.2	26.69
Zm00001d011885_P008	Maize	cytosol	16.94	25.83
Zm00001d019079_P001	Maize	cytosol	20.95	25.67
Zm00001d007772_P001	Maize	nucleus	20.95	25.61
Zm00001d019084_P002	Maize	nucleus	20.58	24.89
Zm00001d007839_P001	Maize	cytosol	16.76	24.86
Zm00001d052212_P001	Maize	nucleus	7.29	24.84
Zm00001d018730_P001	Maize	nucleus	16.58	24.33
Zm00001d006704_P002	Maize	nucleus	20.95	23.76
Zm00001d019086_P001	Maize	nucleus	21.31	21.99
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	21.49	21.81
Zm00001d042641_P001	Maize	nucleus	11.48	21.36
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	10.38	20.43
Zm00001d044469_P003	Maize	nucleus	16.03	19.69
Zm00001d011336_P002	Maize	nucleus	15.85	19.42
Zm00001d047753_P001	Maize	cytosol, mitochondrion, nucleus	9.84	19.35
Zm00001d028714_P001	Maize	cytosol, nucleus, plasma membrane	10.02	18.52
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	11.29	18.24
Zm00001d042133_P003	Maize	cytosol	12.75	17.59
Zm00001d042042_P001	Maize	nucleus	10.38	16.76
Zm00001d040344_P001	Maize	extracellular, plasma membrane	13.48	16.3
Zm00001d017829_P002	Maize	plastid	10.02	15.94
Zm00001d037209_P001	Maize	plastid	9.47	15.66
Zm00001d046716_P001	Maize	nucleus	10.2	15.56
Zm00001d018103_P002	Maize	plasma membrane	8.93	15.41
Zm00001d051627_P002	Maize	plastid	9.65	14.4
Zm00001d002141_P006	Maize	nucleus	12.93	13.63
Zm00001d026397_P001	Maize	nucleus, plasma membrane	12.75	13.44

Protein Annotations

EntrezGene:100193339	Gene3D:3.30.70.330	Gene3D:3.40.1380.10	MapMan:35.1	UniProt:A0A1D6QQB0	ProteinID:AQK59726.1
InterPro:ATP_synth_F1_ATPase_gsu	InterPro:ATP_synth_F1_gsu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046933	GO:GO:0099132
InterPro:Hrp1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00231
PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF52943	SUPFAM:SSF54928
UniParc:UPI000843F609	EnsemblPlantsGene:Zm00001d053572	EnsemblPlants:Zm00001d053572_P002	EnsemblPlants:Zm00001d053572_T002	SEG:seg	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr4:+:234902783..234907567

Molecular Weight (calculated)

57843.3 Da

IEP (calculated)

6.205

GRAVY (calculated)

-0.439

Length

549 amino acids

Sequence
(BLAST)

001: MKVALVVLTG ERDLCGSFNN NVLKKVETRM EELEQLGLQY TVISVGKKGN AYFQRRPYIP LERGLEVNDV PTVKDSQATC DLVYSLFVSE EVDKVELLYS
101: AGALRPHHLD AAPHVPQGRL FPEVCSMAGY PEDNQHELNG YDEEVDEEEG HPGRRVGRDG GSGYAVAVGE DGRGAGGDSL GKIFVGGVAW ETTEGMLLCE
201: IFFPVHLQSL VCYFCDSVLS KLTNLYGFIC LYVESFSKHF EKYGAITDSV IMKDKHTKMP RGFGFVTFSD PSVIDKVLED DHVIDGRTVE VKRTVPREEM
301: ITKDGPKTRK IFIGGLPPSL TEDELKDHFS SYGNVVEHQI MLDHSTGRSR GFGFITFESE DSVERVISEG RMRDLGGKQV EIKKAEPKKH GSDHSSNGRS
401: NHGGGAYRNS YRSGGGAGSG SSGGGGGYGY GGAYRSAAAG YGYDGGAGAG YGYGRGYGYG GNAGFGSSFG GGYGGSMYGG AAYGAYGAYG GGAYGGGAYG
501: GGAYGGGAAY GGAPGGYGTG GYGSYGGAGS TGGGSTGARG SSRYHPYGK

Best Arabidopsis Sequence Match ( AT1G17640.1 )
(BLAST)

001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.