Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012372 | Potato | nucleus | 54.5 | 67.34 |
| Solyc06g062740.1.1 | Tomato | cytosol | 29.43 | 54.82 |
| Solyc03g121710.2.1 | Tomato | nucleus | 28.34 | 38.66 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 29.43 | 36.99 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 34.6 | 35.98 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 29.7 | 32.34 |
| KRH23293 | Soybean | nucleus | 31.06 | 32.29 |
| CDY26229 | Canola | nucleus | 32.15 | 31.81 |
| Solyc07g045240.2.1 | Tomato | nucleus | 29.7 | 31.78 |
| CDY48318 | Canola | nucleus | 32.15 | 31.72 |
| AT1G17640.1 | Thale cress | nucleus | 31.61 | 31.44 |
| EES06526 | Sorghum | nucleus | 33.24 | 31.2 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 31.88 | 30.95 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 33.79 | 30.92 |
| Os02t0221500-01 | Rice | nucleus | 33.24 | 30.73 |
| Zm00001d016349_P002 | Maize | nucleus | 31.88 | 30.47 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 32.7 | 30.08 |
| GSMUA_Achr10P... | Banana | nucleus | 27.25 | 30.03 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 33.79 | 30.02 |
| Zm00001d046190_P001 | Maize | extracellular | 34.06 | 29.9 |
| EER88542 | Sorghum | nucleus | 33.52 | 29.71 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 32.43 | 29.1 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 32.7 | 29.06 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 32.7 | 28.99 |
| Solyc02g093340.2.1 | Tomato | nucleus | 29.7 | 28.02 |
| Solyc04g014820.2.1 | Tomato | cytosol | 20.16 | 27.61 |
| Solyc04g077520.2.1 | Tomato | nucleus | 25.07 | 26.98 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 32.43 | 26.8 |
| HORVU6Hr1G040220.5 | Barley | plastid | 33.24 | 26.29 |
| Solyc09g090520.2.1 | Tomato | nucleus | 33.24 | 25.68 |
| Solyc03g005680.2.1 | Tomato | nucleus | 29.43 | 25.29 |
| Solyc09g072790.2.1 | Tomato | nucleus | 26.16 | 24.37 |
| Zm00001d053572_P002 | Maize | cytosol | 31.61 | 21.13 |
| Solyc07g048030.2.1 | Tomato | nucleus | 24.25 | 20.37 |
| Solyc11g012470.1.1 | Tomato | nucleus | 23.71 | 20.33 |
| Solyc12g006180.1.1 | Tomato | nucleus | 24.25 | 20.32 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 20.44 | 20.22 |
| Solyc02g090910.2.1 | Tomato | nucleus | 20.44 | 19.95 |
| Solyc10g006050.2.1 | Tomato | nucleus | 23.43 | 19.86 |
| Solyc12g014600.1.1 | Tomato | nucleus | 22.07 | 18.54 |
| Solyc02g064540.1.1 | Tomato | nucleus | 18.26 | 18.11 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 12.26 | 17.24 |
| Solyc02g021560.2.1 | Tomato | nucleus | 19.89 | 16.94 |
| Solyc12g014210.1.1 | Tomato | nucleus | 14.17 | 15.52 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 10.08 | 15.35 |
| Solyc02g082270.2.1 | Tomato | nucleus | 11.44 | 14.89 |
| Solyc04g049920.2.1 | Tomato | nucleus | 9.54 | 14.52 |
| Solyc01g008970.2.1 | Tomato | nucleus | 14.44 | 14.1 |
| Solyc04g011560.2.1 | Tomato | nucleus | 17.98 | 14.04 |
| Solyc04g074310.2.1 | Tomato | nucleus | 10.35 | 12.97 |
| Solyc10g081330.1.1 | Tomato | nucleus | 14.71 | 12.95 |
Protein Annotations
| EnsemblPlants:Solyc06g062730.1.1 | EnsemblPlantsGene:Solyc06g062730.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002766952 | UniProt:K4C704 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6:+:39579298..39581189
Molecular Weight (calculated)
40134.0 Da
IEP (calculated)
8.547
GRAVY (calculated)
-0.848
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDEERNED VEMADREADE LKPSTNDSSV RKLFVGSISK KTTEESFREY FSKFGQVAGS KLLCDKDSGM RQGIGFVSYA DPKIADKALE EDHTIDGKKV
101: VVKKALDKTT RIYVGDFPLS LTQDELKEYF SYYGSVVDHC IVMDKTTGQS RGFGFVSFDK EETVEEVLSN GHIHELCGKQ VAIRKSKPKR DCIGHTSESQ
201: IHHGRSGSKS YYSDDGYRGS SHGVPASYGR GRGYGNSGNI WSYGGNRVYR GGGRNGVYAY GNTGAANERY VTAYYGRSRG YGYSGRSWND GGNIGYGGGG
301: SNGACVYGNT GAATGRSVPA YYGRGRGYGN SGNIWKYEGN GGYRGGGTND AYAYDNIGAA NRRYHPY
101: VVKKALDKTT RIYVGDFPLS LTQDELKEYF SYYGSVVDHC IVMDKTTGQS RGFGFVSFDK EETVEEVLSN GHIHELCGKQ VAIRKSKPKR DCIGHTSESQ
201: IHHGRSGSKS YYSDDGYRGS SHGVPASYGR GRGYGNSGNI WSYGGNRVYR GGGRNGVYAY GNTGAANERY VTAYYGRSRG YGYSGRSWND GGNIGYGGGG
301: SNGACVYGNT GAATGRSVPA YYGRGRGYGN SGNIWKYEGN GGYRGGGTND AYAYDNIGAA NRRYHPY
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.