Factsheet for Solyc12g006180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074192	Potato	nucleus	96.8	89.45
Solyc07g048030.2.1	Tomato	nucleus	75.11	75.29
Solyc04g014820.2.1	Tomato	cytosol	39.27	64.18
VIT_12s0057g00480.t01	Wine grape	nucleus	69.63	63.81
KRH74025	Soybean	nucleus	66.44	61.26
KRH14098	Soybean	nucleus	66.67	60.96
Solyc10g006050.2.1	Tomato	nucleus	56.85	57.51
Solyc12g014600.1.1	Tomato	nucleus	56.62	56.75
Solyc11g012470.1.1	Tomato	nucleus	53.42	54.67
HORVU0Hr1G008280.1	Barley	nucleus	55.71	52.7
TraesCS4A01G150600.1	Wheat	nucleus	55.48	52.48
TraesCS4D01G152200.1	Wheat	nucleus	55.48	52.48
TraesCSU01G068500.1	Wheat	nucleus	55.25	52.27
GSMUA_Achr10P...	Banana	nucleus	52.28	52.05
GSMUA_Achr10P...	Banana	nucleus	53.88	51.3
Os11t0637700-01	Rice	plasma membrane	54.57	51.18
GSMUA_Achr4P33100_001	Banana	nucleus	50.23	49.77
Zm00001d007772_P001	Maize	nucleus	50.23	49.0
EER97452	Sorghum	nucleus	52.51	48.83
Os07t0584500-01	Rice	nucleus	52.51	48.73
GSMUA_Achr6P10970_001	Banana	nucleus	55.48	48.6
EER96020	Sorghum	nucleus	50.46	48.57
EER98147	Sorghum	nucleus	50.23	48.57
Zm00001d019079_P001	Maize	cytosol	49.54	48.44
TraesCS2B01G216600.2	Wheat	cytosol	51.14	47.56
Zm00001d006704_P002	Maize	nucleus	52.05	47.11
TraesCS2D01G197500.2	Wheat	nucleus	50.46	47.02
Zm00001d019084_P002	Maize	nucleus	48.17	46.48
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	52.28	42.33
TraesCS2A01G190400.1	Wheat	plastid	50.68	41.81
Zm00001d019086_P001	Maize	nucleus	50.0	41.17
OQU83904	Sorghum	nucleus	38.58	37.56
Solyc09g072790.2.1	Tomato	nucleus	31.28	34.77
GSMUA_Achr3P02300_001	Banana	nucleus	52.97	34.17
Solyc03g005680.2.1	Tomato	nucleus	32.88	33.72
Solyc07g045240.2.1	Tomato	nucleus	25.8	32.94
Solyc09g090520.2.1	Tomato	nucleus	35.62	32.84
Solyc03g121710.2.1	Tomato	nucleus	19.41	31.6
Solyc04g077520.2.1	Tomato	nucleus	23.52	30.21
Solyc02g093340.2.1	Tomato	nucleus	26.26	29.56
Solyc06g062740.1.1	Tomato	cytosol	11.64	25.89
Solyc06g062730.1.1	Tomato	nucleus	20.32	24.25
Solyc02g090910.2.1	Tomato	nucleus	20.78	24.2
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	19.41	22.91
Solyc02g064540.1.1	Tomato	nucleus	18.04	21.35
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	10.73	18.01
Solyc02g021560.2.1	Tomato	nucleus	16.89	17.17
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	8.22	14.94
Solyc10g081330.1.1	Tomato	nucleus	13.24	13.91
Solyc04g011560.2.1	Tomato	nucleus	14.61	13.62
Solyc02g082270.2.1	Tomato	nucleus	7.99	12.41
Solyc04g074310.2.1	Tomato	nucleus	8.22	12.29
Solyc04g049920.2.1	Tomato	nucleus	6.62	12.03
Solyc01g008970.2.1	Tomato	nucleus	9.13	10.64
Solyc12g014210.1.1	Tomato	nucleus	7.53	9.85

Protein Annotations

EnsemblPlants:Solyc12g006180.1.1	EnsemblPlantsGene:Solyc12g006180.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000276A639	UniProt:K4DBF5	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:+:723407..728206

Molecular Weight (calculated)

45589.4 Da

IEP (calculated)

9.377

GRAVY (calculated)

-0.581

Length

438 amino acids

Sequence
(BLAST)

001: MKDRTTGRAR GFGFVVFADP AAAERVVKEK HNIDGRMVEA KRAVPRDDQS TTSRSSPSIH GSPSPGPGRT RKIFVGGLAS TVTETAFKQY FEQFGTITDA
101: VVMYDHNTQR PRGFGFITYD SEDAVDKVLL KSYHELNDKM VEVKRAVPKE LSPGPSQSPL GRYSYGLNRM NNFLDGYAQG YSPNTVGGYG VGMDGRFSPI
201: TGGRSVFTPF GSGYGMGLNF EPGLSPGYGG SANVNSSLSY GRGLNPYYSS SRLGGGIGFD GGSGGGNTSF LNSANRNLWG DGGLHHGTTS TSSSNFLVSG
301: SGGNIGGGSF SNSGVWGSSI SSQGGGNVSS KNGNLGYVNG DSIYGMAGGY GRNVTKRGAA MPSGSRGSYD GGPLADLYGS GLGYDDHTWR PSNSEQDATG
401: SLGYGLGNGP SDMSPQSTSG YVGSYGVGNR QPNRGMDG

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.