Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14098 | Soybean | nucleus | 97.68 | 96.87 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 80.42 | 79.92 |
| Solyc07g048030.2.1 | Tomato | nucleus | 66.32 | 72.08 |
| PGSC0003DMT400074192 | Potato | nucleus | 68.21 | 68.35 |
| Solyc12g006180.1.1 | Tomato | nucleus | 61.26 | 66.44 |
| KRH46297 | Soybean | nucleus | 65.68 | 65.14 |
| GSMUA_Achr10P... | Banana | nucleus | 60.0 | 64.77 |
| KRG98573 | Soybean | nucleus | 65.05 | 64.51 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 62.74 | 64.36 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 62.74 | 64.36 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 62.74 | 64.36 |
| KRH73860 | Soybean | nucleus | 64.42 | 64.15 |
| TraesCSU01G068500.1 | Wheat | nucleus | 62.53 | 64.15 |
| GSMUA_Achr10P... | Banana | nucleus | 62.11 | 64.13 |
| Os11t0637700-01 | Rice | plasma membrane | 62.11 | 63.17 |
| KRH14284 | Soybean | nucleus | 63.37 | 62.97 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 66.11 | 62.8 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 57.05 | 61.31 |
| Os07t0584500-01 | Rice | nucleus | 58.53 | 58.9 |
| EER98147 | Sorghum | nucleus | 55.58 | 58.28 |
| Zm00001d019079_P001 | Maize | cytosol | 54.74 | 58.04 |
| Zm00001d007772_P001 | Maize | nucleus | 54.74 | 57.91 |
| EER96020 | Sorghum | nucleus | 55.37 | 57.8 |
| EER97452 | Sorghum | nucleus | 57.26 | 57.75 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 57.05 | 57.54 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 56.84 | 57.45 |
| Zm00001d019084_P002 | Maize | nucleus | 54.32 | 56.83 |
| Zm00001d006704_P002 | Maize | nucleus | 56.84 | 55.79 |
| KRH07772 | Soybean | cytosol | 11.37 | 55.1 |
| TraesCS2A01G190400.1 | Wheat | plastid | 56.42 | 50.47 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 56.63 | 49.72 |
| Zm00001d019086_P001 | Maize | nucleus | 55.16 | 49.25 |
| OQU83904 | Sorghum | nucleus | 45.68 | 48.22 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 64.21 | 44.92 |
| KRH34534 | Soybean | nucleus | 40.21 | 40.55 |
| KRG92276 | Soybean | endoplasmic reticulum | 40.21 | 40.13 |
| KRH56541 | Soybean | nucleus | 16.42 | 39.0 |
| KRH17717 | Soybean | nucleus | 28.84 | 38.92 |
| KRG94084 | Soybean | nucleus | 29.89 | 37.97 |
| KRH07154 | Soybean | nucleus | 29.68 | 37.9 |
| KRH23293 | Soybean | nucleus | 26.74 | 35.98 |
| KRG93213 | Soybean | nucleus | 27.16 | 34.22 |
| KRH61448 | Soybean | nucleus | 26.32 | 32.55 |
| KRH52137 | Soybean | nucleus | 25.89 | 32.54 |
| KRH28467 | Soybean | cytosol | 22.53 | 29.32 |
| KRH75298 | Soybean | cytosol, nucleus | 6.11 | 29.29 |
| KRH77004 | Soybean | nucleus | 22.32 | 29.28 |
| KRH13261 | Soybean | cytosol | 7.16 | 27.42 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 17.68 | 25.93 |
| KRH40033 | Soybean | nucleus | 13.05 | 22.79 |
| KRH23771 | Soybean | nucleus | 13.05 | 22.79 |
| KRH51553 | Soybean | nucleus, plastid | 13.05 | 21.68 |
| KRH60871 | Soybean | nucleus, plastid | 12.84 | 21.33 |
| KRH64318 | Soybean | nucleus | 11.37 | 21.01 |
| KRH53608 | Soybean | nucleus | 10.74 | 20.73 |
| KRH18921 | Soybean | nucleus | 12.0 | 20.65 |
| KRH26210 | Soybean | nucleus | 18.95 | 20.59 |
| KRH16743 | Soybean | nucleus | 11.79 | 20.44 |
| KRH55109 | Soybean | nucleus | 18.95 | 20.27 |
| KRG95365 | Soybean | nucleus | 14.11 | 19.94 |
| KRH50169 | Soybean | nucleus | 16.0 | 19.79 |
| KRH06384 | Soybean | nucleus | 12.42 | 19.6 |
| KRH67043 | Soybean | nucleus | 13.89 | 19.41 |
| KRH71299 | Soybean | nucleus | 15.58 | 19.27 |
| KRH06306 | Soybean | nucleus | 10.74 | 18.96 |
| KRH47819 | Soybean | nucleus | 11.79 | 18.92 |
| KRH47731 | Soybean | nucleus | 10.53 | 18.73 |
| KRH62327 | Soybean | nucleus | 10.95 | 18.12 |
| KRH06373 | Soybean | nucleus | 10.53 | 18.05 |
| KRH47808 | Soybean | nucleus | 10.74 | 17.83 |
| KRH62942 | Soybean | mitochondrion | 7.58 | 17.65 |
| KRH53044 | Soybean | nucleus | 10.53 | 17.42 |
| KRH73477 | Soybean | nucleus | 16.84 | 16.13 |
| KRH14673 | Soybean | nucleus | 16.42 | 15.79 |
| KRG94993 | Soybean | nucleus | 15.79 | 15.66 |
| KRH66628 | Soybean | nucleus | 15.37 | 15.02 |
Protein Annotations
| EntrezGene:100799330 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02001294 | InterPro:DAZAP1_RRM2 | EnsemblPlantsGene:GLYMA_02G306700 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JJR5 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH74025 | ProteinID:KRH74025 | ProteinID:KRH74025.1 | ProteinID:KRH74026.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000233776C | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:48124852..48131001
Molecular Weight (calculated)
49911.3 Da
IEP (calculated)
9.106
GRAVY (calculated)
-0.481
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDNGKLFI GGISWDTNEE RLREYFCTYG EVVEAVIMKD RTTGRARGFG FVVFSDPAVA EIVIKEKHNI DGRMVEAKKA VPRDDQNILS RNSGSIHGSP
101: GPGRTRKIFV GGLASTVTES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DKVLLKTFHE LNGKMVEVKR AVPKELSPGP SRTPLGGYNY
201: GLTRVNSFLN GFTQGYTPST VGGYGLRADG RFSPVAGGRS GFAPFGSGYG MSMNFEPGLN AGFGGNANFN SNLSYDRGVN PYFIGSSNRF GSPVGYESGN
301: GGNNSFFSSV TRNLWGNGGL SSANSNAYIG SGSGSVGGNT FGNTGVNWGS SAISGQQGGG NNMSQSSGNL GYGGGDNSYG LGTGGYGRST GAAFAPTSSY
401: SASNGGVDGA FADFYNNSSV YGDPTWRSSN SERDGSGPFG YGFGGVASDV SAKSSPGYVG GYTVNKRQPN RGIAT
101: GPGRTRKIFV GGLASTVTES DFKKYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEEAV DKVLLKTFHE LNGKMVEVKR AVPKELSPGP SRTPLGGYNY
201: GLTRVNSFLN GFTQGYTPST VGGYGLRADG RFSPVAGGRS GFAPFGSGYG MSMNFEPGLN AGFGGNANFN SNLSYDRGVN PYFIGSSNRF GSPVGYESGN
301: GGNNSFFSSV TRNLWGNGGL SSANSNAYIG SGSGSVGGNT FGNTGVNWGS SAISGQQGGG NNMSQSSGNL GYGGGDNSYG LGTGGYGRST GAAFAPTSSY
401: SASNGGVDGA FADFYNNSSV YGDPTWRSSN SERDGSGPFG YGFGGVASDV SAKSSPGYVG GYTVNKRQPN RGIAT
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.