Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010282_P001 | |
| Zm00001d038190_P012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | Zm00001d010282_P001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | Zm00001d038190_P012 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01849 | Sorghum | nucleus | 71.18 | 92.37 |
| Zm00001d042641_P001 | Maize | nucleus | 76.47 | 88.14 |
| Os01t0876800-00 | Rice | nucleus | 74.41 | 84.33 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 72.65 | 83.45 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 72.35 | 83.11 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 72.06 | 82.49 |
| KRH75298 | Soybean | cytosol, nucleus | 23.53 | 80.81 |
| KRH13261 | Soybean | cytosol | 28.53 | 78.23 |
| GSMUA_Achr10P... | Banana | nucleus | 54.41 | 68.27 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 53.24 | 67.29 |
| KRH40033 | Soybean | nucleus | 52.35 | 65.44 |
| KRH23771 | Soybean | nucleus | 52.06 | 65.07 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 50.0 | 64.89 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 50.88 | 64.07 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 48.53 | 63.71 |
| PGSC0003DMT400008944 | Potato | nucleus | 49.41 | 63.64 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 47.65 | 62.07 |
| CDY69197 | Canola | nucleus | 33.24 | 50.22 |
| Bra024547.1-P | Field mustard | nucleus | 34.12 | 48.54 |
| CDY04769 | Canola | nucleus | 33.53 | 48.1 |
| CDX73279 | Canola | cytosol | 33.24 | 46.69 |
| Bra012350.1-P | Field mustard | nucleus | 33.53 | 45.78 |
| AT1G33470.1 | Thale cress | cytosol | 32.94 | 45.71 |
| CDY25759 | Canola | nucleus | 33.24 | 45.38 |
| KRH62942 | Soybean | mitochondrion | 27.06 | 45.1 |
| Zm00001d052212_P001 | Maize | nucleus | 20.0 | 42.24 |
| Bra010203.1-P | Field mustard | nucleus | 33.53 | 37.38 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 30.59 | 37.28 |
| AT1G22910.3 | Thale cress | nucleus | 37.35 | 36.6 |
| CDY67263 | Canola | nucleus | 35.29 | 36.59 |
| Zm00001d042042_P001 | Maize | nucleus | 35.29 | 35.29 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 27.06 | 32.97 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 27.65 | 31.65 |
| Zm00001d046716_P001 | Maize | nucleus | 31.18 | 29.44 |
| Zm00001d018103_P002 | Maize | plasma membrane | 26.76 | 28.62 |
| CDY13339 | Canola | mitochondrion | 13.82 | 27.98 |
| Zm00001d017829_P002 | Maize | plastid | 27.94 | 27.54 |
| Zm00001d051627_P002 | Maize | plastid | 28.82 | 26.63 |
| Zm00001d037209_P001 | Maize | plastid | 25.88 | 26.51 |
| CDY21399 | Canola | mitochondrion | 11.18 | 26.21 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 47.35 | 24.14 |
| Zm00001d016349_P002 | Maize | nucleus | 17.65 | 15.62 |
| Zm00001d030579_P001 | Maize | mitochondrion | 15.59 | 15.23 |
| Zm00001d046190_P001 | Maize | extracellular | 18.53 | 15.07 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 18.24 | 15.01 |
| Zm00001d034200_P001 | Maize | nucleus | 7.06 | 14.04 |
| Zm00001d032739_P001 | Maize | nucleus | 17.94 | 13.77 |
| Zm00001d019079_P001 | Maize | cytosol | 17.94 | 13.62 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 15.29 | 13.58 |
| Zm00001d007839_P001 | Maize | cytosol | 14.71 | 13.51 |
| Zm00001d044469_P003 | Maize | nucleus | 17.65 | 13.42 |
| Zm00001d011336_P002 | Maize | nucleus | 17.65 | 13.39 |
| Zm00001d007772_P001 | Maize | nucleus | 17.65 | 13.36 |
| Zm00001d011885_P008 | Maize | cytosol | 14.12 | 13.33 |
| Zm00001d034201_P001 | Maize | nucleus | 9.71 | 13.15 |
| Zm00001d006704_P002 | Maize | nucleus | 18.24 | 12.81 |
| Zm00001d019084_P002 | Maize | nucleus | 17.06 | 12.78 |
| Zm00001d014058_P002 | Maize | plastid | 17.94 | 12.66 |
| Zm00001d018730_P001 | Maize | nucleus | 13.53 | 12.3 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.18 | 12.11 |
| Zm00001d019086_P001 | Maize | nucleus | 18.24 | 11.65 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 18.53 | 11.65 |
| Zm00001d053572_P002 | Maize | cytosol | 18.24 | 11.29 |
| Zm00001d002141_P006 | Maize | nucleus | 16.47 | 10.75 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.88 | 10.36 |
| Zm00001d042133_P003 | Maize | cytosol | 10.0 | 8.54 |
Protein Annotations
| EntrezGene:103636431 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6G7M7 | ProteinID:AQK99162.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0008442F5D | EnsemblPlantsGene:Zm00001d012238 | EnsemblPlants:Zm00001d012238_P003 | EnsemblPlants:Zm00001d012238_T003 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr8:-:170738693..170744334
Molecular Weight (calculated)
36991.9 Da
IEP (calculated)
9.205
GRAVY (calculated)
-0.223
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSVMGQF GDTTYTKVFV GGLAWETQKE TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFRDSDAA MRACVDPAPV IDGRRANCNL ASLGVQRSRP
101: PTPQHGGARN FKVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHI YGYSPYTLDY GYPTNFYNIY GGPQYTFYGG GAGMVTGTSP FYPYFQFGQS
201: GNTTTNYTSG QGYNLQYPQM FHFSTVSSTA AAVNGFAQQY GGPLSLAASP QAQAGMTMAL AAPTMVSLLV IAVLSRFQLV ESMHPSLTPK GTIVDHVYQP
301: KCSHPYPTWS CGNWILALAP GWAQSFMPRG WGVLTDKYKP
101: PTPQHGGARN FKVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHI YGYSPYTLDY GYPTNFYNIY GGPQYTFYGG GAGMVTGTSP FYPYFQFGQS
201: GNTTTNYTSG QGYNLQYPQM FHFSTVSSTA AAVNGFAQQY GGPLSLAASP QAQAGMTMAL AAPTMVSLLV IAVLSRFQLV ESMHPSLTPK GTIVDHVYQP
301: KCSHPYPTWS CGNWILALAP GWAQSFMPRG WGVLTDKYKP
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.