Factsheet for Bra010203.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007261.1-P
Bra014678.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33470.1	Bra007261.1-P	AT3G56680.1	21798944
AT1G33470.1	Bra014678.1-P	AT3G56680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73279	Canola	cytosol	76.39	96.28
AT1G33470.1	Thale cress	cytosol	71.8	89.39
KRH75298	Soybean	cytosol, nucleus	21.31	65.66
KRH13261	Soybean	cytosol	24.92	61.29
KRH23771	Soybean	nucleus	41.97	47.06
KRH40033	Soybean	nucleus	41.64	46.69
VIT_18s0089g00920.t01	Wine grape	nucleus	40.66	46.1
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	38.69	45.21
PGSC0003DMT400008944	Potato	nucleus	38.36	44.32
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	38.69	43.7
GSMUA_Achr10P...	Banana	nucleus	38.36	43.17
EES01849	Sorghum	nucleus	37.05	43.13
Bra024547.1-P	Field mustard	nucleus	33.77	43.1
GSMUA_Achr8P08440_001	Banana	nucleus	36.39	42.86
GSMUA_Achr3P21850_001	Banana	nucleus	36.72	42.75
Bra012350.1-P	Field mustard	nucleus	34.75	42.57
Bra012254.1-P	Field mustard	nucleus	31.15	39.42
Os01t0876800-00	Rice	nucleus	38.69	39.33
Zm00001d042641_P001	Maize	nucleus	37.7	38.98
Bra016445.1-P	Field mustard	nucleus	32.79	38.76
TraesCS3D01G380100.1	Wheat	nucleus	37.38	38.51
TraesCS3B01G419200.1	Wheat	nucleus	37.38	38.51
TraesCS3A01G389600.1	Wheat	nucleus	37.38	38.38
Bra025852.1-P	Field mustard	nucleus	32.79	38.31
KRH62942	Soybean	mitochondrion	25.57	38.24
Os01t0958500-01	Rice	nucleus	37.38	36.77
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	9.18	35.9
Bra004508.1-P	Field mustard	nucleus	35.41	34.62
HORVU3Hr1G110370.1	Barley	cytosol, mitochondrion, nucleus	35.08	34.19
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	34.43	33.65
TraesCS3B01G562300.3	Wheat	mitochondrion	34.43	33.65
TraesCS3D01G505900.1	Wheat	mitochondrion	34.75	33.54
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	37.38	33.53
EES02078	Sorghum	nucleus	36.39	32.84
Bra040485.1-P	Field mustard	nucleus	35.08	32.82
Bra007096.1-P	Field mustard	nucleus	27.54	32.43
Zm00001d042042_P001	Maize	nucleus	34.43	30.88
Bra003651.1-P	Field mustard	nucleus	27.21	30.63
Bra012321.1-P	Field mustard	nucleus	28.52	30.1
Bra031385.1-P	Field mustard	nucleus	28.2	29.66
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	26.23	25.64
Bra029612.1-P	Field mustard	nucleus	15.74	16.72
GSMUA_Achr6P24180_001	Banana	cytosol	35.41	16.19
Bra039664.1-P	Field mustard	nucleus	21.31	15.66
Bra038113.1-P	Field mustard	nucleus	20.98	15.46
Bra031230.1-P	Field mustard	nucleus	15.41	15.31
Bra001228.1-P	Field mustard	cytosol	18.03	15.19
Bra010757.1-P	Field mustard	nucleus	18.36	14.66
Bra021850.1-P	Field mustard	nucleus	16.72	13.9
Bra005496.1-P	Field mustard	nucleus	17.05	13.83
Bra022938.1-P	Field mustard	nucleus	17.38	12.99
Bra039380.1-P	Field mustard	nucleus	14.75	12.43
Bra024928.1-P	Field mustard	nucleus	17.05	12.38
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	14.75	12.36
Bra021062.1-P	Field mustard	nucleus	15.74	12.24
Bra017475.1-P	Field mustard	nucleus	17.05	12.18
Bra017802.1-P	Field mustard	nucleus	15.74	11.76
Bra028973.1-P	Field mustard	nucleus	16.39	11.55
Bra022145.1-P	Field mustard	nucleus	17.05	11.3
Bra001267.1-P	Field mustard	nucleus	17.38	11.25
Bra014667.1-P	Field mustard	nucleus	11.15	11.15
Bra016954.1-P	Field mustard	nucleus	16.07	11.14
Bra007277.1-P	Field mustard	nucleus	16.39	11.14
Bra030265.1-P	Field mustard	nucleus	13.11	10.93
Bra040031.1-P	Field mustard	nucleus	17.38	10.91
Bra019094.1-P	Field mustard	nucleus	15.74	10.37
Bra029681.1-P	Field mustard	nucleus	16.72	10.18
Bra026413.1-P	Field mustard	nucleus	14.1	10.17
Bra025568.1-P	Field mustard	nucleus	17.7	9.91

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra010203	EnsemblPlants:Bra010203.1	EnsemblPlants:Bra010203.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4D154	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44374	PANTHER:PTHR44374:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253F84F	SEG:seg

Description

AT1G33470 (E=1e-068) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:20902145..20903754

Molecular Weight (calculated)

33221.2 Da

IEP (calculated)

8.523

GRAVY (calculated)

-0.240

Length

305 amino acids

Sequence
(BLAST)

001: MEDTTFTKVF VGGLAWETNK VSLRSYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACIDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GGRGVKVTSP FKTHFGTAAA LPSPIPFSHY TLPYTNPYGY STFNLLPHLS KQTYNPLFKL HRFSSYSMDY NYPTSYYNVY GGATAQHPMY STGPMTGIAA
201: AAAAYYPYLQ FAEGNGPVTG YAPLHYPNHM FHYSTGGNYP HHNASPVSLA PSPVIPSGLT AKAHGLLVSS SPQDLWPNHG CLFPFRQEPI NLECGHLCKF
301: QLSLT

Best Arabidopsis Sequence Match ( AT1G33470.2 )
(BLAST)

001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.