Factsheet for Bra030265.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15850	Canola	nucleus	99.45	98.38
AT2G22100.1	Thale cress	nucleus	72.68	69.63
AT2G19380.1	Thale cress	nucleus	54.64	32.63
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.83	32.05
Bra031230.1-P	Field mustard	nucleus	24.32	28.99
Bra014667.1-P	Field mustard	nucleus	19.4	23.28
VIT_07s0031g01290.t01	Wine grape	nucleus	24.59	22.96
Bra007277.1-P	Field mustard	nucleus	26.78	21.83
Bra016954.1-P	Field mustard	nucleus	24.32	20.23
Solyc04g011560.2.1	Tomato	nucleus	25.14	19.57
PGSC0003DMT400016249	Potato	nucleus	24.86	18.5
Bra038113.1-P	Field mustard	nucleus	20.49	18.12
Bra039664.1-P	Field mustard	nucleus	20.22	17.83
Bra016445.1-P	Field mustard	nucleus	11.75	16.67
Bra012254.1-P	Field mustard	nucleus	10.93	16.6
Bra025852.1-P	Field mustard	nucleus	11.48	16.09
Bra024547.1-P	Field mustard	nucleus	10.38	15.9
Bra012350.1-P	Field mustard	nucleus	10.11	14.86
Bra007096.1-P	Field mustard	nucleus	10.38	14.67
Bra004508.1-P	Field mustard	nucleus	12.02	14.1
Bra040485.1-P	Field mustard	nucleus	11.75	13.19
Bra010203.1-P	Field mustard	nucleus	10.93	13.11
Bra003651.1-P	Field mustard	nucleus	9.56	12.92
Bra039380.1-P	Field mustard	nucleus	12.3	12.43
Bra029612.1-P	Field mustard	nucleus	9.56	12.2
Bra012321.1-P	Field mustard	nucleus	9.56	12.11
Bra010757.1-P	Field mustard	nucleus	12.57	12.04
Bra005496.1-P	Field mustard	nucleus	12.3	11.97
Bra022938.1-P	Field mustard	nucleus	13.11	11.76
Bra031385.1-P	Field mustard	nucleus	9.29	11.72
Bra001267.1-P	Field mustard	nucleus	15.03	11.68
Bra040031.1-P	Field mustard	nucleus	15.3	11.52
Bra001228.1-P	Field mustard	cytosol	11.2	11.33
Bra021850.1-P	Field mustard	nucleus	11.2	11.17
Bra029681.1-P	Field mustard	nucleus	15.03	10.98
Bra021062.1-P	Field mustard	nucleus	11.75	10.97
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.29	10.9
Bra024928.1-P	Field mustard	nucleus	11.75	10.24
Bra022145.1-P	Field mustard	nucleus	12.57	10.0
Bra028973.1-P	Field mustard	nucleus	11.75	9.93
Bra017802.1-P	Field mustard	nucleus	10.93	9.8
Bra025568.1-P	Field mustard	nucleus	14.48	9.72
Bra019094.1-P	Field mustard	nucleus	12.02	9.5
Bra017475.1-P	Field mustard	nucleus	10.93	9.37
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	9.29	9.34
Bra026413.1-P	Field mustard	nucleus	10.66	9.22

Protein Annotations

EnsemblPlants:Bra030265.1	EnsemblPlants:Bra030265.1-P	EnsemblPlantsGene:Bra030265	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	ncoils:Coil	PANTHER:PTHR44578	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544015	UniProt:M4EN95	MapMan:35.1	:

Description

AT2G22100 (E=3e-082) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA04:-:9503884..9504984

Molecular Weight (calculated)

41011.0 Da

IEP (calculated)

9.896

GRAVY (calculated)

-1.029

Length

366 amino acids

Sequence
(BLAST)

001: MAKDREDRKK EKREKKEKKE KKERKRREAE ELAVREKKIS KKHKSKSKAA EKPEKKPKKK SKKLQVVEEK PLKKSKKHKK PTESESESES EETVTVPPDD
101: SHPIKIPTNE SDSDSEFDKE DLKHLLETYT KEELVNLIHK TAEKGSRLIS AVLESAELDS SKRNIFVRGL GWDTTHETLK AAFEVYGEIE ECSVVMDKDT
201: GRAKGYGFVM FKTRKGCREA LRNPEKRMFN RTVSCNLAAA KPAGAGKARE PVESVKIDLT QSEVVLPGPP PGLDLGYGLD KGHKNVPQMY GGQNMPFYGH
301: GHAPPGFNPM YFMGNQMGPG VPNFPMFGPG MMNHGPLNHM GMAGQYGGEG NGVGPGFDGE RAWYLR

Best Arabidopsis Sequence Match ( AT2G22100.1 )
(BLAST)

001: MAKEGEERKK EKKEKKERKE RKRREAEELA VREKKISKKH KSKSKEEEKP EKSKKKSKKY EEVEEEEKSP SPSPSPKKSK ESKKKHKRSS DESEEIVDSK
101: PVTVPIVTIE SDSDFEFDKE DIKNLLESYS KEELINLIYK TAEKGSKLIS AVFESADRDS SQRNIFVRGL GWDTTHENLK AAFEVYGEIT ECSVVMDKDT
201: GRAKGFGFVL FKTRKGARAA LKNPEKRMYN RTVSCLPARP FNSGKPREQQ QPVESVKIDL SHTGNQSEMA LPGIDLGHGL DKGHQQQQNM SMYAGQNMPF
301: YGHSQPPPGF NPMYGAMMGN PMVAGLQNYR MFGSGMMNQG PMMPPNHMGM VGQYVGDGNV NGVGAGAGAG AGFDGERAWY LR

Arabidopsis Description

UBA1BUBP1-associated proteins 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9SHZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.