Factsheet for Bra035441.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45879	Canola	cytosol, nucleus, plastid	89.74	20.23
CDY44555	Canola	cytosol, nucleus, plastid	87.18	18.73
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	85.9	18.41
AT1G58470.2	Thale cress	cytosol, nucleus, plastid	74.36	16.11
Bra012350.1-P	Field mustard	nucleus	41.03	12.85
Solyc04g077520.2.1	Tomato	nucleus	55.13	12.61
PGSC0003DMT400012586	Potato	nucleus	55.13	12.5
Bra012254.1-P	Field mustard	nucleus	38.46	12.45
Bra024547.1-P	Field mustard	nucleus	37.18	12.13
Bra016445.1-P	Field mustard	nucleus	37.18	11.24
Bra007096.1-P	Field mustard	nucleus	37.18	11.2
Bra025852.1-P	Field mustard	nucleus	37.18	11.11
Bra010757.1-P	Field mustard	nucleus	52.56	10.73
Bra021850.1-P	Field mustard	nucleus	48.72	10.35
Bra031230.1-P	Field mustard	nucleus	39.74	10.1
Bra005496.1-P	Field mustard	nucleus	47.44	9.84
Bra003651.1-P	Field mustard	nucleus	33.33	9.59
Bra012321.1-P	Field mustard	nucleus	34.62	9.34
Bra022938.1-P	Field mustard	nucleus	48.72	9.31
Bra010203.1-P	Field mustard	nucleus	35.9	9.18
Bra031385.1-P	Field mustard	nucleus	33.33	8.97
Bra029612.1-P	Field mustard	nucleus	29.49	8.01
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	32.05	8.01
Bra004508.1-P	Field mustard	nucleus	32.05	8.01
Bra040485.1-P	Field mustard	nucleus	33.33	7.98
Bra021062.1-P	Field mustard	nucleus	39.74	7.91
Bra039380.1-P	Field mustard	nucleus	34.62	7.46
Bra028973.1-P	Field mustard	nucleus	41.03	7.39
Bra024928.1-P	Field mustard	nucleus	39.74	7.38
Bra017475.1-P	Field mustard	nucleus	39.74	7.26
Bra001267.1-P	Field mustard	nucleus	43.59	7.22
Bra040031.1-P	Field mustard	nucleus	43.59	7.0
Bra030265.1-P	Field mustard	nucleus	32.05	6.83
Bra029681.1-P	Field mustard	nucleus	43.59	6.79
Bra038113.1-P	Field mustard	nucleus	35.9	6.76
Bra039664.1-P	Field mustard	nucleus	35.9	6.75
Bra001228.1-P	Field mustard	cytosol	30.77	6.63
Bra019094.1-P	Field mustard	nucleus	38.46	6.48
Bra026413.1-P	Field mustard	nucleus	34.62	6.38
VIT_18s0001g08640.t01	Wine grape	nucleus	38.46	6.37
Bra022145.1-P	Field mustard	nucleus	35.9	6.09
Bra025568.1-P	Field mustard	nucleus	42.31	6.06
Bra017802.1-P	Field mustard	nucleus	30.77	5.88
Bra016954.1-P	Field mustard	nucleus	32.05	5.68
Bra014667.1-P	Field mustard	nucleus	21.79	5.57
Bra007277.1-P	Field mustard	nucleus	30.77	5.35
KRH05541	Soybean	cytosol, endoplasmic reticulum	10.26	2.47

Protein Annotations

EnsemblPlants:Bra035441.1	EnsemblPlants:Bra035441.1-P	EnsemblPlantsGene:Bra035441	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00025448D5	UniProt:M4F2Z1	MapMan:35.1	:	:	:

Description

AT1G58470 (E=5e-026) ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1); RNA binding / single-stranded RNA binding

Coordinates

chrA01:+:16222054..16222290

Molecular Weight (calculated)

8584.2 Da

IEP (calculated)

9.562

GRAVY (calculated)

-0.258

Length

78 amino acids

Sequence
(BLAST)

1: MDCDRYKLFV GGIPRGTSEE SLKQHFSRYG AVLGAVVAKE KATGQPRGLG FGFVRFASAY DVDKALRDSH YILSRAVD

Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.