Factsheet for Bra016954.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06947	Canola	nucleus	95.91	98.14
CDY57580	Canola	nucleus	92.73	92.1
AT2G41060.3	Thale cress	nucleus	75.0	73.17
Bra007277.1-P	Field mustard	nucleus	65.68	64.37
Bra014667.1-P	Field mustard	nucleus	42.05	60.66
VIT_08s0056g00690.t01	Wine grape	nucleus	55.0	52.27
KRG94993	Soybean	nucleus	53.86	49.48
KRH66628	Soybean	nucleus	53.64	48.56
GSMUA_Achr6P15950_001	Banana	nucleus	50.0	47.21
Zm00001d040344_P001	Maize	extracellular, plasma membrane	45.91	44.49
EES02736	Sorghum	plastid	45.45	43.1
TraesCS3D01G186500.1	Wheat	nucleus	46.59	42.71
TraesCS3B01G211700.1	Wheat	nucleus	43.86	42.6
HORVU3Hr1G037280.1	Barley	nucleus, plastid	47.05	42.42
TraesCS3A01G181900.1	Wheat	nucleus	46.14	42.29
Os01t0265800-01	Rice	nucleus	46.14	41.43
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	38.64	39.17
HORVU6Hr1G054690.5	Barley	plastid	15.0	35.11
GSMUA_Achr10P...	Banana	nucleus	18.18	34.63
GSMUA_AchrUn_...	Banana	nucleus	32.05	32.87
GSMUA_Achr4P09210_001	Banana	nucleus	32.5	32.35
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	5.68	32.05
Bra039664.1-P	Field mustard	nucleus	29.77	31.57
HORVU2Hr1G116150.4	Barley	nucleus	29.55	31.4
Bra038113.1-P	Field mustard	nucleus	29.32	31.16
Os02t0602600-00	Rice	nucleus	27.27	31.09
Os04t0636900-02	Rice	nucleus	36.36	31.07
KXG30578	Sorghum	nucleus	25.91	30.65
TraesCS2A01G526400.1	Wheat	nucleus	35.23	30.45
TraesCS2D01G529100.1	Wheat	nucleus	35.23	30.45
TraesCS2B01G556700.1	Wheat	nucleus	35.23	30.45
Bra031230.1-P	Field mustard	nucleus	20.68	29.64
EES12939	Sorghum	nucleus	35.45	29.6
Zm00001d002141_P006	Maize	nucleus	35.0	29.56
Zm00001d026397_P001	Maize	nucleus, plasma membrane	34.32	28.98
EES10068	Sorghum	nucleus	26.36	26.91
Bra030265.1-P	Field mustard	nucleus	20.23	24.32
HORVU2Hr1G116230.1	Barley	nucleus	20.91	22.66
Bra016445.1-P	Field mustard	nucleus	13.18	22.48
Bra012254.1-P	Field mustard	nucleus	12.27	22.41
Bra025852.1-P	Field mustard	nucleus	13.18	22.22
Bra024547.1-P	Field mustard	nucleus	11.14	20.5
Bra007096.1-P	Field mustard	nucleus	12.05	20.46
Bra039380.1-P	Field mustard	nucleus	16.82	20.44
Bra003651.1-P	Field mustard	nucleus	11.82	19.19
Bra012350.1-P	Field mustard	nucleus	10.68	18.88
Bra004508.1-P	Field mustard	nucleus	12.73	17.95
Bra010757.1-P	Field mustard	nucleus	15.0	17.28
Bra040485.1-P	Field mustard	nucleus	12.5	16.87
Bra012321.1-P	Field mustard	nucleus	10.91	16.61
Bra031385.1-P	Field mustard	nucleus	10.91	16.55
Bra021850.1-P	Field mustard	nucleus	13.64	16.35
Bra010203.1-P	Field mustard	nucleus	11.14	16.07
Bra005496.1-P	Field mustard	nucleus	13.64	15.96
Bra025568.1-P	Field mustard	nucleus	19.55	15.78
Bra021062.1-P	Field mustard	nucleus	13.86	15.56
Bra001267.1-P	Field mustard	nucleus	16.59	15.5
Bra040031.1-P	Field mustard	nucleus	16.82	15.23
Bra022938.1-P	Field mustard	nucleus	13.86	14.95
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.27	14.84
Bra029681.1-P	Field mustard	nucleus	16.82	14.77
Bra017802.1-P	Field mustard	nucleus	13.41	14.46
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	10.23	14.42
Bra026413.1-P	Field mustard	nucleus	13.41	13.95
Bra001228.1-P	Field mustard	cytosol	11.36	13.81
Bra029612.1-P	Field mustard	nucleus	8.86	13.59
Bra028973.1-P	Field mustard	nucleus	13.18	13.39
Bra019094.1-P	Field mustard	nucleus	13.86	13.17
Bra017475.1-P	Field mustard	nucleus	12.73	13.11
Bra024928.1-P	Field mustard	nucleus	12.5	13.1
Bra022145.1-P	Field mustard	nucleus	12.73	12.17

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra016954	EnsemblPlants:Bra016954.1	EnsemblPlants:Bra016954.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006950	GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4DKC5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578
PANTHER:PTHR44578:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025452ED
SEG:seg	:	:	:	:	:

Description

AT2G41060 (E=5e-128) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA04:+:17413931..17415253

Molecular Weight (calculated)

47281.9 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.790

Length

440 amino acids

Sequence
(BLAST)

001: MADKKRKLEA QSNDASEPPQ KQQQQLENGD EEITTEIHEN ENENQRPDED DDQEPIEDLL EPFSKEQLSI LLKEAAQKHP DVADRIRIAA DEDPVHRKIF
101: VHGFGWDTKA DALIKAFKQY GEIEDCKCVV DKGTGQSKGY GFILFKSRSG ARSALKQPQK KIGTRMAACQ LASMGPVQGG NSAAAAAAGA TSQHFNPEHV
201: QRKIYVSNVS ADIDPERLLE FFSRFGEVEE GPLGLDKATG RPKGFTLFVY KTAESAKKAL EEPHKSFEGH VLHCHKANDG PKPVKQQHQN QHQHRHSSYD
301: QGSRYRRDDN AGYGATGGHG HYLAGNNQAA ALNPAIGQAI TALLASQGAG VGMNQAFGQA LLGTLGAPSP GTGGGMPSGY GGQANITPGV FPGYGYEASF
401: QGGYQTQLPG QGGYQTQQPG QGSAGRGQHG LGYGGQYMGQ

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.