Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30578 | Sorghum | nucleus | 57.51 | 59.68 |
| HORVU6Hr1G054690.5 | Barley | plastid | 26.17 | 53.72 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 34.46 | 30.65 |
| Solyc01g008970.2.1 | Tomato | nucleus | 28.24 | 28.99 |
| CDX76015 | Canola | nucleus | 22.54 | 28.52 |
| CDY06947 | Canola | nucleus | 31.35 | 28.14 |
| AT2G41060.3 | Thale cress | nucleus | 32.38 | 27.72 |
| Bra014667.1-P | Field mustard | nucleus | 21.76 | 27.54 |
| CDY57580 | Canola | nucleus | 31.61 | 27.54 |
| Bra016954.1-P | Field mustard | nucleus | 31.09 | 27.27 |
| CDX72106 | Canola | nucleus | 32.12 | 27.25 |
| Bra007277.1-P | Field mustard | nucleus | 31.61 | 27.17 |
| CDY27186 | Canola | nucleus | 31.35 | 26.95 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 31.09 | 25.92 |
| KRG94993 | Soybean | nucleus | 32.12 | 25.89 |
| AT3G56860.10 | Thale cress | nucleus | 31.61 | 25.52 |
| KRH66628 | Soybean | nucleus | 32.12 | 25.51 |
| PGSC0003DMT400058431 | Potato | nucleus | 30.83 | 24.29 |
| Os01t0265800-01 | Rice | nucleus | 30.57 | 24.08 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 31.87 | 23.75 |
| KRH14673 | Soybean | nucleus | 29.79 | 23.28 |
| Os01t0614500-01 | Rice | nucleus | 26.68 | 23.04 |
| Os04t0636900-02 | Rice | nucleus | 30.31 | 22.72 |
| KRH73477 | Soybean | nucleus | 29.02 | 22.58 |
| Os02t0755400-01 | Rice | plastid | 10.1 | 22.16 |
| CDY47382 | Canola | golgi, plastid | 22.54 | 20.91 |
| Os02t0714000-01 | Rice | nucleus, plastid | 12.95 | 17.42 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 11.14 | 15.64 |
| Os01t0876800-00 | Rice | nucleus | 11.92 | 15.33 |
| Os02t0221500-01 | Rice | nucleus | 15.54 | 15.11 |
| Os05t0376000-00 | Rice | cytosol | 8.03 | 14.83 |
| Os06t0220600-01 | Rice | plastid | 12.95 | 14.58 |
| Os01t0945800-01 | Rice | nucleus | 12.95 | 13.77 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 10.36 | 13.7 |
| Os01t0958500-01 | Rice | nucleus | 10.88 | 13.55 |
| Os08t0320100-01 | Rice | nucleus | 11.92 | 13.14 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 10.36 | 12.9 |
| Os07t0584500-01 | Rice | nucleus | 15.54 | 12.71 |
| Os07t0124600-01 | Rice | nucleus | 11.92 | 12.2 |
| Os11t0637700-01 | Rice | plasma membrane | 13.99 | 11.56 |
| Os08t0492100-02 | Rice | nucleus | 11.4 | 10.09 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0P0VLM6 | ProteinID:BAS79631.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| EnsemblPlantsGene:Os02g0602600 | EnsemblPlants:Os02t0602600-00 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 | PANTHER:PTHR44678:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0003939BB7 |
| SEG:seg | : | : | : | : | : |
Description
RNA recognition motif domain domain containing protein. (Os02t0602600-00)
Coordinates
chr2:+:23581962..23584956
Molecular Weight (calculated)
41587.1 Da
IEP (calculated)
7.829
GRAVY (calculated)
-0.452
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRKRGRT RRATQAEAEV EQSEREMVGD EAVEEEEDDD VTKMNPPPAT AGEREEEEEE EGIEGLLEPF TRNELLDLLV EACLRNPALR SRLAATAESD
101: AAHRRLFVHG LSPGVTAAAM AAAFAPFGAL DECHAVADRA TGRCRGYGFV TFRRRSAARR ALAADASSRL AVGGRPVACQ LASLGPTSPD RKLFVDNVPA
201: RAAHDELRRL FSRFGEIEAG PLGADRATGQ FRGYAIFFYK YPEGLTKALE ERKVVFDGCE LHCRRAHRVN KEKHLMTMPA DAGAQSNGFE NAASPIIHVQ
301: PKELALASTT QTPLGSNRPV EMMAKGPRSG TVPFRQNAGA GLLGACPVAT VTSSTPDQST PVSHSGASIS TPRTAQRLAK SGLIQS
101: AAHRRLFVHG LSPGVTAAAM AAAFAPFGAL DECHAVADRA TGRCRGYGFV TFRRRSAARR ALAADASSRL AVGGRPVACQ LASLGPTSPD RKLFVDNVPA
201: RAAHDELRRL FSRFGEIEAG PLGADRATGQ FRGYAIFFYK YPEGLTKALE ERKVVFDGCE LHCRRAHRVN KEKHLMTMPA DAGAQSNGFE NAASPIIHVQ
301: PKELALASTT QTPLGSNRPV EMMAKGPRSG TVPFRQNAGA GLLGACPVAT VTSSTPDQST PVSHSGASIS TPRTAQRLAK SGLIQS
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.