Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0411600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | Os05t0411600-01 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042641_P001 | Maize | nucleus | 93.67 | 95.25 |
| EES01849 | Sorghum | nucleus | 81.33 | 93.13 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 91.33 | 92.57 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 91.0 | 92.23 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 90.67 | 91.58 |
| KRH75298 | Soybean | cytosol, nucleus | 27.0 | 81.82 |
| KRH13261 | Soybean | cytosol | 32.67 | 79.03 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 84.33 | 74.41 |
| GSMUA_Achr10P... | Banana | nucleus | 64.0 | 70.85 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 63.0 | 70.26 |
| KRH40033 | Soybean | nucleus | 63.67 | 70.22 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 61.0 | 69.85 |
| KRH23771 | Soybean | nucleus | 63.0 | 69.49 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 58.33 | 67.57 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 60.0 | 66.67 |
| PGSC0003DMT400008944 | Potato | nucleus | 57.67 | 65.53 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 55.33 | 63.6 |
| CDY69197 | Canola | nucleus | 38.33 | 51.11 |
| Bra024547.1-P | Field mustard | nucleus | 39.33 | 49.37 |
| CDY04769 | Canola | nucleus | 38.67 | 48.95 |
| CDX73279 | Canola | cytosol | 39.0 | 48.35 |
| AT1G33470.1 | Thale cress | cytosol | 38.67 | 47.35 |
| Bra012350.1-P | Field mustard | nucleus | 38.67 | 46.59 |
| CDY25759 | Canola | nucleus | 38.33 | 46.18 |
| KRH62942 | Soybean | mitochondrion | 31.0 | 45.59 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 39.0 | 42.55 |
| Os01t0958500-01 | Rice | nucleus | 43.67 | 42.26 |
| Os02t0755400-01 | Rice | plastid | 23.0 | 39.2 |
| Bra010203.1-P | Field mustard | nucleus | 39.33 | 38.69 |
| AT1G22910.3 | Thale cress | nucleus | 42.33 | 36.6 |
| Os02t0714000-01 | Rice | nucleus, plastid | 35.0 | 36.59 |
| CDY67263 | Canola | nucleus | 39.33 | 35.98 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 34.33 | 33.23 |
| CDY13339 | Canola | mitochondrion | 16.67 | 29.76 |
| Os06t0220600-01 | Rice | plastid | 32.67 | 28.57 |
| CDY21399 | Canola | mitochondrion | 13.33 | 27.59 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 55.33 | 24.89 |
| Os08t0320100-01 | Rice | nucleus | 19.33 | 16.57 |
| Os02t0221500-01 | Rice | nucleus | 21.67 | 16.37 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 14.67 | 15.07 |
| Os01t0614500-01 | Rice | nucleus | 21.67 | 14.54 |
| Os01t0945800-01 | Rice | nucleus | 16.67 | 13.77 |
| Os11t0637700-01 | Rice | plasma membrane | 20.33 | 13.06 |
| Os07t0584500-01 | Rice | nucleus | 20.33 | 12.92 |
| Os07t0124600-01 | Rice | nucleus | 16.0 | 12.73 |
| Os02t0602600-00 | Rice | nucleus | 15.33 | 11.92 |
| Os04t0636900-02 | Rice | nucleus | 19.0 | 11.07 |
| Os01t0265800-01 | Rice | nucleus | 17.0 | 10.41 |
| Os05t0376000-00 | Rice | cytosol | 6.67 | 9.57 |
| Os08t0492100-02 | Rice | nucleus | 12.67 | 8.72 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4325083 | ProteinID:BAD81881.1 | ProteinID:BAD82096.1 | ProteinID:BAS75512.1 |
| ProteinID:EAZ14353.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0876800 | EnsemblPlants:Os01t0876800-00 | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | UniProt:Q5N8W4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000049E8E6 | RefSeq:XP_015621219.1 | SEG:seg | : | : |
Description
RNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os01t0876800-00)
Coordinates
chr1:+:38048047..38054353
Molecular Weight (calculated)
31953.5 Da
IEP (calculated)
9.014
GRAVY (calculated)
-0.212
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPSVIGQF GDTTYTKVFV GGLAWETQKE TMRKYFEQFG EILEAVVITD KNTGRSKGYG FVTFRDPDAA MRACVDPAPV IDGRRANCNL ASLGVQRSRP
101: PTPQHGGARS FRVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHV YGYSPYSPDY SYPTNYYNIY GGAQYPFYGA AAAAAAAAAG MVTGSSPFYP
201: YFQFGQSGST TTNYASGQGY NLQYPQMFHF STVASTAAAV TGFAQQYGGP LSLAASPQAQ AGMTMALTAP TLPTPTQAAH PYRLIPSHFA VSAAPEQPLA
101: PTPQHGGARS FRVMKSFSQQ AGIQGGLGAA FPSHATFPHY AIPQGLPYHV YGYSPYSPDY SYPTNYYNIY GGAQYPFYGA AAAAAAAAAG MVTGSSPFYP
201: YFQFGQSGST TTNYASGQGY NLQYPQMFHF STVASTAAAV TGFAQQYGGP LSLAASPQAQ AGMTMALTAP TLPTPTQAAH PYRLIPSHFA VSAAPEQPLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.