Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73279 | Canola | cytosol | 92.24 | 93.39 |
| Bra010203.1-P | Field mustard | nucleus | 89.39 | 71.8 |
| KRH75298 | Soybean | cytosol, nucleus | 26.53 | 65.66 |
| KRH13261 | Soybean | cytosol | 31.43 | 62.1 |
| KRH23771 | Soybean | nucleus | 51.43 | 46.32 |
| KRH40033 | Soybean | nucleus | 51.02 | 45.96 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 50.2 | 45.72 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 48.16 | 45.21 |
| PGSC0003DMT400008944 | Potato | nucleus | 47.76 | 44.32 |
| AT5G53720.1 | Thale cress | cytosol | 17.96 | 44.0 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 45.71 | 43.24 |
| GSMUA_Achr10P... | Banana | nucleus | 47.76 | 43.17 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 47.35 | 42.96 |
| EES01849 | Sorghum | nucleus | 45.31 | 42.37 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 44.9 | 41.98 |
| Os01t0876800-00 | Rice | nucleus | 47.35 | 38.67 |
| Zm00001d042641_P001 | Maize | nucleus | 46.12 | 38.31 |
| KRH62942 | Soybean | mitochondrion | 31.84 | 38.24 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 46.12 | 38.18 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 46.12 | 38.18 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 46.12 | 38.05 |
| Os01t0958500-01 | Rice | nucleus | 47.35 | 37.42 |
| AT1G20880.1 | Thale cress | nucleus | 41.22 | 36.86 |
| AT1G76460.1 | Thale cress | nucleus | 41.22 | 35.44 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 43.67 | 34.19 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 42.86 | 33.65 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 42.86 | 33.65 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 43.27 | 33.54 |
| AT5G53680.1 | Thale cress | cytosol | 22.86 | 33.14 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 45.71 | 32.94 |
| EES02078 | Sorghum | nucleus | 45.31 | 32.84 |
| AT1G22910.3 | Thale cress | nucleus | 44.9 | 31.7 |
| Zm00001d042042_P001 | Maize | nucleus | 43.67 | 31.47 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 22.45 | 31.43 |
| AT2G46780.1 | Thale cress | nucleus | 42.86 | 31.25 |
| AT3G54770.1 | Thale cress | nucleus | 32.65 | 30.65 |
| AT1G78260.1 | Thale cress | nucleus | 35.51 | 30.31 |
| AT1G22330.1 | Thale cress | nucleus | 35.1 | 29.55 |
| AT3G06970.1 | Thale cress | nucleus | 21.22 | 16.4 |
| AT1G17640.1 | Thale cress | nucleus | 22.86 | 15.18 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 40.82 | 14.99 |
| AT3G15010.2 | Thale cress | nucleus | 24.08 | 14.6 |
| AT2G33410.1 | Thale cress | nucleus | 23.67 | 14.36 |
| AT3G13224.2 | Thale cress | nucleus | 19.18 | 13.13 |
| AT2G22090.2 | Thale cress | nucleus | 18.37 | 12.97 |
| AT4G36960.2 | Thale cress | cytosol | 20.0 | 12.93 |
| AT4G14300.1 | Thale cress | nucleus | 21.22 | 12.65 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 17.96 | 12.22 |
| AT5G40490.1 | Thale cress | nucleus | 20.0 | 11.58 |
| AT2G41060.3 | Thale cress | nucleus | 19.59 | 10.64 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 19.59 | 10.6 |
| AT4G26650.1 | Thale cress | nucleus | 19.59 | 10.55 |
| AT3G07810.2 | Thale cress | nucleus | 21.22 | 10.51 |
| AT2G22100.1 | Thale cress | nucleus | 15.92 | 10.21 |
| AT3G56860.10 | Thale cress | nucleus | 19.59 | 10.04 |
| AT5G55550.10 | Thale cress | nucleus | 19.59 | 9.47 |
| AT2G19380.1 | Thale cress | nucleus | 17.14 | 6.85 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:840240 | UniProt:A0A178W8E2 | ProteinID:AEE31596.1 | EMBL:AK176398 |
| ArrayExpress:AT1G33470 | EnsemblPlantsGene:AT1G33470 | RefSeq:AT1G33470 | TAIR:AT1G33470 | RefSeq:AT1G33470-TAIR-G | EnsemblPlants:AT1G33470.1 |
| TAIR:AT1G33470.1 | Unigene:At.17522 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_174613.2 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAP13342.1 | PFAM:PF00076 | PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 |
| UniProt:Q67YS0 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000034F440 |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
Coordinates
chr1:+:12144440..12147208
Molecular Weight (calculated)
26235.8 Da
IEP (calculated)
8.010
GRAVY (calculated)
-0.213
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.