Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90262 | Canola | nucleus | 77.37 | 83.25 |
| CDY12068 | Canola | nucleus | 72.51 | 83.24 |
| Bra010757.1-P | Field mustard | nucleus | 77.13 | 82.98 |
| AT2G33410.1 | Thale cress | nucleus | 60.34 | 61.39 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 69.1 | 61.21 |
| Solyc03g005680.2.1 | Tomato | nucleus | 60.58 | 58.31 |
| PGSC0003DMT400035000 | Potato | nucleus | 62.04 | 57.69 |
| Solyc09g090520.2.1 | Tomato | nucleus | 66.18 | 57.26 |
| KRH34534 | Soybean | nucleus | 65.21 | 56.9 |
| PGSC0003DMT400044195 | Potato | nucleus | 65.69 | 56.84 |
| KRG92276 | Soybean | endoplasmic reticulum | 64.23 | 55.46 |
| KRH07772 | Soybean | cytosol | 12.9 | 54.08 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 57.66 | 52.43 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 57.66 | 52.2 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 57.42 | 51.98 |
| KXG38359 | Sorghum | nucleus | 57.18 | 51.88 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 50.61 | 51.49 |
| Zm00001d032739_P001 | Maize | nucleus | 55.23 | 51.24 |
| Zm00001d014058_P002 | Maize | plastid | 55.96 | 47.72 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 57.66 | 46.47 |
| AT3G13224.2 | Thale cress | nucleus | 29.93 | 34.36 |
| AT1G17640.1 | Thale cress | nucleus | 30.17 | 33.6 |
| AT3G07810.2 | Thale cress | nucleus | 40.15 | 33.33 |
| AT5G40490.1 | Thale cress | nucleus | 33.09 | 32.15 |
| AT4G26650.1 | Thale cress | nucleus | 35.52 | 32.09 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 27.74 | 31.67 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 33.82 | 30.68 |
| AT5G53720.1 | Thale cress | cytosol | 7.06 | 29.0 |
| AT5G55550.10 | Thale cress | nucleus | 34.79 | 28.21 |
| AT4G36960.2 | Thale cress | cytosol | 23.11 | 25.07 |
| AT1G20880.1 | Thale cress | nucleus | 14.84 | 22.26 |
| AT1G76460.1 | Thale cress | nucleus | 15.09 | 21.75 |
| AT1G33470.1 | Thale cress | cytosol | 12.65 | 21.22 |
| AT3G15010.2 | Thale cress | nucleus | 18.98 | 19.31 |
| AT5G53680.1 | Thale cress | cytosol | 7.54 | 18.34 |
| AT3G54770.1 | Thale cress | nucleus | 10.95 | 17.24 |
| AT1G22330.1 | Thale cress | nucleus | 11.68 | 16.49 |
| AT2G41060.3 | Thale cress | nucleus | 18.0 | 16.41 |
| AT1G78260.1 | Thale cress | nucleus | 11.19 | 16.03 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.81 | 16.0 |
| AT2G46780.1 | Thale cress | nucleus | 12.65 | 15.48 |
| AT3G56860.10 | Thale cress | nucleus | 17.27 | 14.85 |
| AT3G06970.1 | Thale cress | nucleus | 11.44 | 14.83 |
| AT2G22090.2 | Thale cress | nucleus | 12.17 | 14.41 |
| AT1G22910.3 | Thale cress | nucleus | 11.92 | 14.12 |
| AT2G22100.1 | Thale cress | nucleus | 12.17 | 13.09 |
| AT2G19380.1 | Thale cress | nucleus | 11.19 | 7.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:827071 | ProteinID:AEE83411.1 | EMBL:AJ303457 | EMBL:AK226323 |
| ProteinID:ANM66890.1 | ArrayExpress:AT4G14300 | EnsemblPlantsGene:AT4G14300 | RefSeq:AT4G14300 | TAIR:AT4G14300 | RefSeq:AT4G14300-TAIR-G |
| EnsemblPlants:AT4G14300.1 | TAIR:AT4G14300.1 | ProteinID:CAB10209.1 | ProteinID:CAB78472.1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0030529 |
| GO:GO:0051028 | GO:GO:1901000 | GO:GO:2000070 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001328758.1 |
| RefSeq:NP_193166.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 |
| PANTHER:PTHR44291 | UniProt:Q8W034 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000A7BC6 | SEG:seg | : | : | : | : |
Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
Coordinates
chr4:+:8231002..8234281
Molecular Weight (calculated)
42355.8 Da
IEP (calculated)
5.675
GRAVY (calculated)
-0.763
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.