Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G53720.1 | Thale cress | cytosol | 36.69 | 62.0 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 40.24 | 38.86 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 28.4 | 31.79 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 29.59 | 31.45 |
| HORVU6Hr1G070140.3 | Barley | plastid | 28.4 | 30.77 |
| HORVU6Hr1G070150.1 | Barley | plastid | 29.59 | 29.94 |
| Os02t0755400-01 | Rice | plastid | 30.18 | 28.98 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.18 | 28.81 |
| Zm00001d052212_P001 | Maize | nucleus | 27.22 | 28.57 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 33.14 | 23.24 |
| AT1G33470.1 | Thale cress | cytosol | 33.14 | 22.86 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.95 | 22.41 |
| KRH53608 | Soybean | nucleus | 32.54 | 22.36 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.77 | 22.03 |
| AT1G20880.1 | Thale cress | nucleus | 35.5 | 21.9 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 36.09 | 21.86 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 35.5 | 21.82 |
| KRH64318 | Soybean | nucleus | 33.14 | 21.79 |
| PGSC0003DMT400025900 | Potato | nucleus | 36.69 | 21.6 |
| Os02t0714000-01 | Rice | nucleus, plastid | 36.69 | 21.6 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 31.36 | 21.29 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 36.09 | 21.03 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 30.77 | 20.88 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 34.91 | 20.85 |
| TraesCS6D01G258900.4 | Wheat | plastid | 35.5 | 20.83 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 34.91 | 20.7 |
| TraesCS6B01G306600.1 | Wheat | plastid | 34.91 | 20.7 |
| EER90058 | Sorghum | plastid | 34.91 | 20.63 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 34.91 | 20.56 |
| TraesCS6A01G278300.3 | Wheat | plastid | 35.5 | 20.55 |
| AT1G76460.1 | Thale cress | nucleus | 34.32 | 20.35 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 34.91 | 20.07 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 30.77 | 19.7 |
| AT3G54770.1 | Thale cress | nucleus | 30.18 | 19.54 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 31.36 | 19.34 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 30.77 | 19.05 |
| OQU85520 | Sorghum | nucleus, plastid | 33.14 | 18.98 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 33.14 | 18.6 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 32.54 | 18.39 |
| TraesCS6D01G297300.1 | Wheat | plastid | 33.73 | 18.27 |
| AT1G78260.1 | Thale cress | nucleus | 30.77 | 18.12 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 32.54 | 18.09 |
| TraesCS6B01G348100.1 | Wheat | plastid | 33.14 | 18.01 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 31.95 | 18.0 |
| AT1G22330.1 | Thale cress | nucleus | 30.77 | 17.87 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 34.91 | 17.77 |
| KXG30724 | Sorghum | plastid | 32.54 | 17.74 |
| HORVU6Hr1G078060.1 | Barley | plastid | 33.14 | 17.72 |
| Zm00001d018103_P002 | Maize | plasma membrane | 32.54 | 17.3 |
| AT2G46780.1 | Thale cress | nucleus | 34.32 | 17.26 |
| Zm00001d046716_P001 | Maize | nucleus | 35.5 | 16.67 |
| Os06t0220600-01 | Rice | plastid | 33.14 | 16.33 |
| Zm00001d037209_P001 | Maize | plastid | 31.36 | 15.96 |
| OQU76075 | Sorghum | plastid | 33.14 | 15.86 |
| AT1G22910.3 | Thale cress | nucleus | 32.54 | 15.85 |
| Zm00001d017829_P002 | Maize | plastid | 31.95 | 15.65 |
| Zm00001d051627_P002 | Maize | plastid | 32.54 | 14.95 |
| AT3G06970.1 | Thale cress | nucleus | 27.22 | 14.51 |
| AT2G22090.2 | Thale cress | nucleus | 24.85 | 12.1 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 32.54 | 11.29 |
| AT4G36960.2 | Thale cress | cytosol | 23.08 | 10.29 |
| AT1G17640.1 | Thale cress | nucleus | 20.71 | 9.49 |
| AT3G15010.2 | Thale cress | nucleus | 22.49 | 9.41 |
| AT3G13224.2 | Thale cress | nucleus | 18.93 | 8.94 |
| AT2G33410.1 | Thale cress | nucleus | 21.3 | 8.91 |
| AT2G22100.1 | Thale cress | nucleus | 20.12 | 8.9 |
| AT2G41060.3 | Thale cress | nucleus | 23.67 | 8.87 |
| AT3G56860.10 | Thale cress | nucleus | 24.26 | 8.58 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 17.75 | 8.33 |
| AT4G14300.1 | Thale cress | nucleus | 18.34 | 7.54 |
| AT5G40490.1 | Thale cress | nucleus | 18.34 | 7.33 |
| AT3G07810.2 | Thale cress | nucleus | 21.3 | 7.27 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 18.93 | 7.06 |
| AT4G26650.1 | Thale cress | nucleus | 18.93 | 7.03 |
| AT5G55550.10 | Thale cress | nucleus | 19.53 | 6.51 |
| AT2G19380.1 | Thale cress | nucleus | 21.3 | 5.87 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:835449 | UniProt:A0A178URQ3 | ProteinID:AED96394.1 | ArrayExpress:AT5G53680 |
| EnsemblPlantsGene:AT5G53680 | RefSeq:AT5G53680 | TAIR:AT5G53680 | RefSeq:AT5G53680-TAIR-G | EnsemblPlants:AT5G53680.1 | TAIR:AT5G53680.1 |
| ProteinID:BAB09540.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_200179.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO96313.1 | PFAM:PF00076 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0020038 | PFscan:PS50102 |
| PANTHER:PTHR44374 | UniProt:Q9FI08 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00000AB844 | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FI08]
Coordinates
chr5:+:21798156..21799420
Molecular Weight (calculated)
19590.1 Da
IEP (calculated)
10.208
GRAVY (calculated)
-0.856
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHHHQNFDT TFTKIYVGGL PWTTRKEGLI NFFKRFGEII HVNVVCDRET DRSQGYGFVT FKDAESATRA CKDPNPTIEG RITNCKLAFV GAKVKPNQSQ
101: PSNLPQLLPR YDPQYNPRYD PMSYQQNRMA NNTNNGIGSI QLQTLLTENR AAHRLRERSQ SFFRHRDLR
101: PSNLPQLLPR YDPQYNPRYD PMSYQQNRMA NNTNNGIGSI QLQTLLTENR AAHRLRERSQ SFFRHRDLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.