Factsheet for GSMUA_Achr5P05400_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14920_001	Banana	plastid	48.48	72.32
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	37.5	62.26
GSMUA_Achr8P23460_001	Banana	nucleus	50.38	56.36
GSMUA_Achr4P09830_001	Banana	mitochondrion	29.55	51.66
Zm00001d052212_P001	Maize	nucleus	31.44	51.55
Os02t0755400-01	Rice	plastid	32.95	49.43
AT5G53720.1	Thale cress	cytosol	17.05	45.0
CDY51790	Canola	cytosol	17.8	43.93
HORVU6Hr1G070150.1	Barley	plastid	27.27	43.11
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	48.48	42.81
HORVU6Hr1G070140.3	Barley	plastid	25.0	42.31
CDY28822	Canola	cytosol, nucleus, plastid	17.8	41.96
TraesCS7D01G180800.1	Wheat	nucleus	46.97	41.2
TraesCS7B01G084600.1	Wheat	nucleus	45.83	40.33
TraesCS7A01G178700.2	Wheat	nucleus	46.21	40.13
TraesCS6D01G297300.1	Wheat	plastid	45.83	38.78
TraesCS6B01G348100.1	Wheat	plastid	45.08	38.26
Os06t0220600-01	Rice	plastid	49.62	38.19
HORVU6Hr1G078060.1	Barley	plastid	45.45	37.97
Zm00001d037209_P001	Maize	plastid	47.73	37.95
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	34.47	37.76
PGSC0003DMT400025900	Potato	nucleus	40.15	36.93
KXG30724	Sorghum	plastid	43.18	36.77
GSMUA_Achr5P17700_001	Banana	cytosol	12.88	36.56
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	40.15	36.55
Zm00001d018103_P002	Maize	plasma membrane	43.56	36.16
OQU76075	Sorghum	plastid	48.11	35.98
Os02t0714000-01	Rice	nucleus, plastid	39.02	35.89
KRH53608	Soybean	nucleus	33.33	35.77
GSMUA_AchrUn_...	Banana	mitochondrion	31.44	34.44
TraesCS6D01G258900.4	Wheat	plastid	37.5	34.38
KRH64318	Soybean	nucleus	33.33	34.24
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	35.61	34.18
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	35.98	34.05
EER90058	Sorghum	plastid	36.74	33.92
TraesCS4D01G225900.1	Wheat	nucleus	31.82	33.73
TraesCS4A01G068100.1	Wheat	nucleus	31.82	33.73
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	36.36	33.68
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	35.98	33.57
TraesCS6A01G278300.3	Wheat	plastid	37.12	33.56
GSMUA_Achr10P...	Banana	nucleus	34.09	33.21
GSMUA_Achr8P08440_001	Banana	nucleus	32.58	33.2
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	35.98	33.1
TraesCS6B01G306600.1	Wheat	plastid	35.61	32.98
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	33.71	32.96
GSMUA_Achr3P21850_001	Banana	nucleus	32.58	32.82
OQU85520	Sorghum	nucleus, plastid	36.36	32.54
HORVU7Hr1G093450.6	Barley	nucleus	35.61	31.97
HORVU4Hr1G063360.1	Barley	nucleus	32.95	31.75
TraesCS4B01G225300.1	Wheat	nucleus	32.58	31.5
AT5G11412.1	Thale cress	endoplasmic reticulum	20.83	31.43
AT5G53680.1	Thale cress	cytosol	19.7	30.77
GSMUA_Achr11P...	Banana	nucleus	30.68	30.57
GSMUA_Achr3P13820_001	Banana	cytosol	31.82	30.11
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	37.12	29.52
Zm00001d046716_P001	Maize	nucleus	36.74	26.94
TraesCS6A01G318100.1	Wheat	nucleus	45.08	24.44
Zm00001d051627_P002	Maize	plastid	33.71	24.18
Zm00001d017829_P002	Maize	plastid	31.44	24.06
GSMUA_Achr10P...	Banana	nucleus	16.67	19.05
GSMUA_Achr7P00730_001	Banana	cytosol	12.88	18.78
GSMUA_Achr4P32300_001	Banana	nucleus	10.23	18.37
AT3G06970.1	Thale cress	nucleus	21.59	17.98
Bra029612.1-P	Field mustard	nucleus	18.56	17.07
GSMUA_Achr10P...	Banana	nucleus	15.15	16.13
CDY08023	Canola	nucleus	20.83	15.28
CDY05301	Canola	nucleus	19.7	14.81
CDY24657	Canola	nucleus	18.94	14.71
GSMUA_Achr9P12410_001	Banana	nucleus	18.18	14.33
CDX74070	Canola	cytosol	19.32	14.17
Bra001228.1-P	Field mustard	cytosol	19.32	14.09
GSMUA_Achr10P...	Banana	nucleus	17.42	13.81
GSMUA_Achr5P09550_001	Banana	nucleus	19.32	13.71
GSMUA_Achr7P13480_001	Banana	nucleus	17.42	13.65
GSMUA_Achr5P09540_001	Banana	nucleus	19.7	13.4
GSMUA_Achr9P12880_001	Banana	cytosol	11.36	13.04
GSMUA_Achr1P19260_001	Banana	nucleus	16.29	12.72
GSMUA_Achr8P25380_001	Banana	nucleus	17.8	12.4
GSMUA_Achr1P09440_001	Banana	cytosol	15.91	12.39
GSMUA_Achr6P24180_001	Banana	cytosol	31.06	12.29
GSMUA_Achr10P...	Banana	nucleus	20.45	12.27
GSMUA_AchrUn_...	Banana	cytosol	14.77	11.85
GSMUA_Achr2P14710_001	Banana	cytosol	15.91	11.7
GSMUA_Achr4P33100_001	Banana	nucleus	19.32	11.54
GSMUA_Achr10P...	Banana	nucleus	20.08	11.52
GSMUA_AchrUn_...	Banana	nucleus	18.56	11.42
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	18.56	11.29
GSMUA_Achr1P10970_001	Banana	nucleus	18.56	11.24
GSMUA_Achr6P15950_001	Banana	nucleus	18.94	10.73
GSMUA_Achr6P10970_001	Banana	nucleus	20.08	10.6
GSMUA_Achr4P09210_001	Banana	nucleus	17.42	10.41
GSMUA_Achr4P24260_001	Banana	cytosol	10.98	8.81
GSMUA_Achr3P02300_001	Banana	nucleus	20.83	8.1
GSMUA_Achr4P28100_001	Banana	nucleus	13.26	7.92
GSMUA_Achr5P17690_001	Banana	nucleus	8.71	5.69

Protein Annotations

EnsemblPlants:GSMUA_Achr5P05400_001	EnsemblPlants:GSMUA_Achr5T05400_001	EnsemblPlantsGene:GSMUA_Achr5G05400_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296E73E	UniProt:M0SVW9	MapMan:35.1	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05400_001]

Coordinates

chr5:+:4013650..4020022

Molecular Weight (calculated)

29108.0 Da

IEP (calculated)

9.012

GRAVY (calculated)

-0.710

Length

264 amino acids

Sequence
(BLAST)

001: MIKSISLPQY RSRFGDTTLT KVFVGGLAWE TPTEELRRYF EQFGEILEAV IISDKITGRS KGYGFVTFRD PESARRSVAD PNPVIDGRRA NCNIASMGRP
101: KPSPPRGRSN QEGSMYQGPV QAPDPPYSRL PAQLPFPSPP MIYPTPYGYV AYPSGHGYQQ AAVYDPQMAS YYYQQLYGPT SPSAVVPPPY HYPPLGYSTQ
201: TGRASFPSPG QGPRPPLMVP TSSQQYPFQL RSPSQARQPL NTIVDSRAPE QTSTAGSDTD DQDS

Best Arabidopsis Sequence Match ( AT1G22330.1 )
(BLAST)

001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.