Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G297300.1 | Wheat | plastid | 93.04 | 94.23 |
| TraesCS6B01G348100.1 | Wheat | plastid | 92.09 | 93.57 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 16.46 | 77.61 |
| Os02t0755400-01 | Rice | plastid | 40.82 | 73.3 |
| Zm00001d052212_P001 | Maize | nucleus | 32.59 | 63.98 |
| KXG30724 | Sorghum | plastid | 61.71 | 62.9 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 94.62 | 61.4 |
| Zm00001d018103_P002 | Maize | plasma membrane | 61.71 | 61.32 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.53 | 54.72 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 29.43 | 52.54 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 37.97 | 50.85 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 43.04 | 45.48 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 37.97 | 45.45 |
| AT5G53720.1 | Thale cress | cytosol | 14.24 | 45.0 |
| HORVU6Hr1G070150.1 | Barley | plastid | 22.78 | 43.11 |
| HORVU6Hr1G070140.3 | Barley | plastid | 20.89 | 42.31 |
| CDY51790 | Canola | cytosol | 12.97 | 38.32 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 29.11 | 38.17 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.29 | 37.5 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.54 | 36.93 |
| KRH53608 | Soybean | nucleus | 27.53 | 35.37 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 31.01 | 33.33 |
| AT5G53680.1 | Thale cress | cytosol | 17.72 | 33.14 |
| KRH64318 | Soybean | nucleus | 26.9 | 33.07 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 17.09 | 30.86 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 31.01 | 29.52 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 27.22 | 27.48 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 23.42 | 27.01 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 26.27 | 26.77 |
| Bra029612.1-P | Field mustard | nucleus | 15.51 | 17.07 |
| HORVU6Hr1G054690.5 | Barley | plastid | 9.81 | 16.49 |
| AT3G06970.1 | Thale cress | nucleus | 16.14 | 16.09 |
| CDY05301 | Canola | nucleus | 16.46 | 14.81 |
| CDY24657 | Canola | nucleus | 15.82 | 14.71 |
| CDY08023 | Canola | nucleus | 15.82 | 13.89 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 18.67 | 13.38 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 14.87 | 13.28 |
| Bra001228.1-P | Field mustard | cytosol | 15.19 | 13.26 |
| CDX74070 | Canola | cytosol | 14.87 | 13.06 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 16.46 | 12.56 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 15.82 | 12.53 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 14.24 | 12.1 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 13.92 | 12.09 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 13.92 | 11.86 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 16.77 | 10.86 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 15.82 | 10.8 |
| HORVU6Hr1G040220.5 | Barley | plastid | 15.82 | 10.78 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 12.34 | 10.77 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 15.51 | 9.61 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 7.59 | 5.91 |
Protein Annotations
| EMBL:AK358372 | EnsemblPlants:HORVU6Hr1G078060.1 | EnsemblPlantsGene:HORVU6Hr1G078060 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44828 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002005475 | UniProt:F2D3B5 | MapMan:35.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D3B5]
Coordinates
chrchr6H:-:532850809..532859261
Molecular Weight (calculated)
33720.6 Da
IEP (calculated)
7.158
GRAVY (calculated)
-0.868
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATAAASSS SPAGGASSPA QAPGGGGGGG GGGGGGGGVP YHRSRFGDTT LTKVFVGGLA WETPSAGLHD HFREYGEILE AVVITDRETG RSKGYGFVTF
101: RDPESAQQAV QNPNPMIAGR RANCNIASMG PPRPSPQRGR APRGPDQQPS SGPPPYMGGR MHQQMPTPPH AMFYHPSQYG YWYPPDYPYQ QAFYNSQMQQ
201: YYSQQYGQTS PSTSPYPYMG YMTNGQNPRA GFSPLQQQAA RPPFFQQQSE GSFQAAPTLP PNFRLQLPPR AISRQSDDVS GSEPTQTVSA AEATNTDNQE
301: ASAPVERSNS EENTSN
101: RDPESAQQAV QNPNPMIAGR RANCNIASMG PPRPSPQRGR APRGPDQQPS SGPPPYMGGR MHQQMPTPPH AMFYHPSQYG YWYPPDYPYQ QAFYNSQMQQ
201: YYSQQYGQTS PSTSPYPYMG YMTNGQNPRA GFSPLQQQAA RPPFFQQQSE GSFQAAPTLP PNFRLQLPPR AISRQSDDVS GSEPTQTVSA AEATNTDNQE
301: ASAPVERSNS EENTSN
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.