Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G249300.1 | Wheat | cytosol | 97.8 | 97.53 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 97.25 | 97.25 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 96.7 | 96.44 |
| Os05t0376000-00 | Rice | cytosol | 45.6 | 79.43 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 67.58 | 68.52 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 67.03 | 67.97 |
| KRH77004 | Soybean | nucleus | 67.03 | 67.4 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 60.71 | 67.17 |
| KRH28467 | Soybean | cytosol | 67.03 | 66.85 |
| AT4G36960.2 | Thale cress | cytosol | 64.56 | 62.01 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 63.19 | 61.99 |
| PGSC0003DMT400010280 | Potato | cytosol | 62.91 | 61.73 |
| Solyc02g090910.2.1 | Tomato | nucleus | 63.19 | 61.17 |
| CDY42724 | Canola | cytosol | 63.19 | 60.69 |
| CDY69852 | Canola | cytosol | 63.19 | 60.21 |
| Bra017802.1-P | Field mustard | nucleus | 62.36 | 55.64 |
| CDX69279 | Canola | nucleus | 21.98 | 33.9 |
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 4.95 | 26.87 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 26.92 | 24.56 |
| HORVU6Hr1G040220.5 | Barley | plastid | 26.65 | 20.91 |
| HORVU6Hr1G054690.5 | Barley | plastid | 10.71 | 20.74 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 21.15 | 20.7 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 19.78 | 20.34 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 25.55 | 20.09 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 27.2 | 19.41 |
| HORVU6Hr1G070150.1 | Barley | plastid | 8.52 | 18.56 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 18.13 | 18.23 |
| HORVU6Hr1G070140.3 | Barley | plastid | 7.42 | 17.31 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 12.91 | 15.99 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 17.31 | 15.22 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 12.36 | 15.05 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 12.91 | 15.02 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 17.86 | 14.74 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 10.99 | 14.6 |
| HORVU6Hr1G078060.1 | Barley | plastid | 12.09 | 13.92 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 12.64 | 13.86 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 17.58 | 13.11 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 10.44 | 12.26 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 10.71 | 9.61 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G057660.1 | EnsemblPlantsGene:HORVU1Hr1G057660 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45519 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B47A618 | UniProt:A0A287FRQ4 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:420574729..420581630
Molecular Weight (calculated)
40212.2 Da
IEP (calculated)
7.269
GRAVY (calculated)
-0.593
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLVVLGI PWDVDTEGLK EYMSKFGSLD DCIVMKDRSS GRSRGFGYVT FSSVEDAKNV VNSEHILGDR TLEVKIATPK EEMRASGNKK ATRIFVARIP
101: QSVDESMFRR HFQSFGEITD LYMPKELGSK EHRGIGFVTF RSAECVDNVM QENHEIDGTT VVVDRATPKQ DEEVRHPPRR GGAEREGGYG SYNAYITAAT
201: RYAALGVPTL YDHPGPAYGR GYLNEPPVSS KKIFVGRLPQ EANTDDLWDY FGRFGRIVDA YIPKDPKKSG HRGFGFVTFA EDGVADRVAR RSHEILGQEV
301: AVDSAAPVEG GPSRGGYMEP PGPYGAYGPM MSYGQFSGSL GYDYGYGPSG SSGRSRVQPR YRPY
101: QSVDESMFRR HFQSFGEITD LYMPKELGSK EHRGIGFVTF RSAECVDNVM QENHEIDGTT VVVDRATPKQ DEEVRHPPRR GGAEREGGYG SYNAYITAAT
201: RYAALGVPTL YDHPGPAYGR GYLNEPPVSS KKIFVGRLPQ EANTDDLWDY FGRFGRIVDA YIPKDPKKSG HRGFGFVTFA EDGVADRVAR RSHEILGQEV
301: AVDSAAPVEG GPSRGGYMEP PGPYGAYGPM MSYGQFSGSL GYDYGYGPSG SSGRSRVQPR YRPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.