Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G249300.1 | Wheat | cytosol | 98.9 | 98.9 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 98.36 | 98.63 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 96.44 | 96.7 |
| Os05t0376000-00 | Rice | cytosol | 45.48 | 79.43 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 67.4 | 68.52 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 66.85 | 67.97 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 60.27 | 66.87 |
| KRH77004 | Soybean | nucleus | 66.3 | 66.85 |
| KRH28467 | Soybean | cytosol | 66.3 | 66.3 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 63.84 | 62.47 |
| AT4G36960.2 | Thale cress | cytosol | 63.56 | 61.21 |
| PGSC0003DMT400010280 | Potato | cytosol | 62.19 | 61.19 |
| Solyc02g090910.2.1 | Tomato | nucleus | 62.47 | 60.64 |
| CDY42724 | Canola | cytosol | 62.19 | 59.89 |
| CDY69852 | Canola | cytosol | 62.19 | 59.42 |
| Bra017802.1-P | Field mustard | nucleus | 61.37 | 54.9 |
| CDX69279 | Canola | nucleus | 21.64 | 33.47 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 27.12 | 24.69 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 26.3 | 23.24 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 26.85 | 21.59 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 19.18 | 20.53 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 20.55 | 20.16 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 25.48 | 20.09 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 19.18 | 20.0 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 18.63 | 18.94 |
| TraesCS2A01G190400.1 | Wheat | plastid | 24.38 | 16.76 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 12.88 | 16.61 |
| TraesCS6A01G278300.3 | Wheat | plastid | 12.88 | 16.1 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 10.68 | 15.66 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 12.33 | 15.15 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 12.33 | 14.8 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 12.6 | 14.74 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 17.26 | 14.32 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 17.81 | 13.54 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 10.41 | 12.62 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 17.26 | 12.38 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 12.05 | 9.03 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G234200.1 | EnsemblPlantsGene:TraesCS1A01G234200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45519 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1A:+:409827847..409833762
Molecular Weight (calculated)
40223.3 Da
IEP (calculated)
7.318
GRAVY (calculated)
-0.585
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLVVLGI PWDVDTEGLK EYMSKFGPLD DCIVMKDRSS GRSRGFGYVT FSSVEDAKNV VNSEHILGDR TLEVKIATPK EEMRAPGNKK ATRIFVARIP
101: QSVDESMFRR HFQTFGEITD LYMPKELGSK EHRGIGFVTF RSAECVDNVM QENHEIDGST VVVDRATPKQ DEEVRHPPRR GGGAQGEGGY GSYNAYITAA
201: TRYAALGVPT LYDHPGPAYG RGYLNEPPVS SKKIFIGRLP QEANTDDLWD YFGRFGRIVD AYIPKDPKKS GHRGFGFVTF AEDGVADRVA RRSHEILGQE
301: VAVDSAAPVE GGPSRGGYME PPAPHGAYSP MMSYGQFSGS LGYDYGYGPS GSSSRSRVQP RYKPY
101: QSVDESMFRR HFQTFGEITD LYMPKELGSK EHRGIGFVTF RSAECVDNVM QENHEIDGST VVVDRATPKQ DEEVRHPPRR GGGAQGEGGY GSYNAYITAA
201: TRYAALGVPT LYDHPGPAYG RGYLNEPPVS SKKIFIGRLP QEANTDDLWD YFGRFGRIVD AYIPKDPKKS GHRGFGFVTF AEDGVADRVA RRSHEILGQE
301: VAVDSAAPVE GGPSRGGYME PPAPHGAYSP MMSYGQFSGS LGYDYGYGPS GSSSRSRVQP RYKPY
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Arabidopsis Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.