Factsheet for TraesCS2A01G267500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G256500.1	Wheat	nucleus	99.46	98.93
HORVU2Hr1G061380.2	Barley	nucleus	93.82	93.82
Os07t0124600-01	Rice	nucleus	72.04	71.09
EER95824	Sorghum	cytosol	68.55	66.93
Zm00001d018730_P001	Maize	nucleus	65.59	65.24
Zm00001d007839_P001	Maize	cytosol	63.71	64.05
TraesCS5A01G405300.1	Wheat	nucleus	38.44	39.83
GSMUA_Achr4P32300_001	Banana	nucleus	11.02	27.89
GSMUA_Achr4P28100_001	Banana	nucleus	30.11	25.34
TraesCS1A01G150600.1	Wheat	nucleus	30.38	24.89
GSMUA_Achr7P00730_001	Banana	cytosol	11.83	24.31
TraesCS7A01G282600.1	Wheat	cytosol	22.04	23.43
TraesCS6A01G187000.1	Wheat	nucleus	25.27	22.76
TraesCS4A01G150600.1	Wheat	nucleus	27.69	22.25
TraesCS7A01G360900.1	Wheat	nucleus	23.92	22.19
TraesCS6A01G291100.1	Wheat	nucleus	19.09	20.82
TraesCS1A01G234200.1	Wheat	cytosol	20.16	20.55
TraesCS2A01G190400.1	Wheat	plastid	28.49	19.96
TraesCS3A01G485000.1	Wheat	cytosol	19.89	19.84
TraesCS4A01G068100.1	Wheat	nucleus	11.56	17.27
TraesCS6A01G278300.3	Wheat	plastid	12.1	15.41
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	11.56	15.19
TraesCS3A01G220400.1	Wheat	nucleus	17.2	14.55
TraesCS3A01G389600.1	Wheat	nucleus	11.56	14.48
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	11.56	13.78
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	10.75	13.29
TraesCS7A01G178700.2	Wheat	nucleus	10.75	13.16
TraesCS2A01G526400.1	Wheat	nucleus	15.05	11.0
TraesCS6A01G318100.1	Wheat	nucleus	12.37	9.45
TraesCS3A01G181900.1	Wheat	nucleus	11.83	9.17
CDX69277	Canola	mitochondrion	3.49	6.99

Protein Annotations

EnsemblPlants:TraesCS2A01G267500.1	EnsemblPlantsGene:TraesCS2A01G267500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44291
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1

Description

No Description!

Coordinates

chr2A:+:428119267..428120694

Molecular Weight (calculated)

40994.8 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.623

Length

372 amino acids

Sequence
(BLAST)

001: MAAAENAGDV AAGESRKLFV GGIPSSAQET ELRGHFARFG AVRSIVVMRD KESGHGRGFG FVEFEDEEAA AKALGDGERP KHFICGRLVD VKRARARPPR
101: NLGEQPVHQH QHQLEQGPVQ GHQEAGDSTE ASSDSMSYAS KKVFIGGLRD NITEEEFRAY FEAFGTVTDV VVIYDSLTSR SRGFGFVTFD SEEAVRKVMG
201: QSFHDLKGTR VEAKIAIPKD AQYYRNGRGR GSRTFGGRGP VGFDDSTYQP YNNRHGFYNG YMPQPVPTHP YYHGLYFGMG GNPYANAYPN HAVMANVPNM
301: VARRPVYSPY PPMYPGYGFA YRSGYAGAAP SVQYGVNGGR DYMNDQDSMD VQELDSTATI ATKFEYMKLG SQ

Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.