Factsheet for TraesCS2D01G256500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytoskeleton, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G267500.1	Wheat	nucleus	98.93	99.46
HORVU2Hr1G061380.2	Barley	nucleus	93.58	94.09
Os07t0124600-01	Rice	nucleus	71.93	71.35
EER95824	Sorghum	cytosol	68.72	67.45
Zm00001d018730_P001	Maize	nucleus	65.78	65.78
Zm00001d007839_P001	Maize	cytosol	63.9	64.59
TraesCS5D01G415400.1	Wheat	nucleus	36.9	39.88
GSMUA_Achr4P32300_001	Banana	nucleus	10.96	27.89
GSMUA_Achr4P28100_001	Banana	nucleus	29.95	25.34
TraesCS1D01G147600.1	Wheat	nucleus	30.21	24.89
GSMUA_Achr7P00730_001	Banana	cytosol	11.76	24.31
TraesCS6D01G173900.1	Wheat	nucleus	25.4	23.23
TraesCS7D01G281300.1	Wheat	nucleus	21.93	23.1
TraesCS2D01G197500.2	Wheat	nucleus	28.34	22.55
TraesCS4D01G152200.1	Wheat	nucleus	27.81	22.46
TraesCS6D01G272500.1	Wheat	nucleus	20.05	21.61
TraesCS3D01G480300.1	Wheat	cytosol	20.86	20.91
TraesCS1D01G237800.3	Wheat	cytosol	20.32	20.88
TraesCS7D01G362200.1	Wheat	nucleus	24.33	20.5
TraesCS4D01G225900.1	Wheat	nucleus	12.03	18.07
TraesCS6D01G258900.4	Wheat	plastid	12.03	15.62
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	11.5	14.98
TraesCS3D01G380100.1	Wheat	nucleus	11.76	14.86
TraesCS6D01G297300.1	Wheat	plastid	12.03	14.42
TraesCS3D01G232300.1	Wheat	nucleus	16.58	14.09
TraesCS7D01G180800.1	Wheat	nucleus	11.23	13.95
TraesCS3D01G505900.1	Wheat	mitochondrion	11.76	13.92
TraesCS4D01G198000.3	Wheat	cytosol	10.96	12.85
TraesCS2D01G529100.1	Wheat	nucleus	14.97	11.0
TraesCS3D01G186500.1	Wheat	nucleus	11.76	9.17
CDX69277	Canola	mitochondrion	3.48	6.99

Protein Annotations

EnsemblPlants:TraesCS2D01G256500.1	EnsemblPlantsGene:TraesCS2D01G256500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44291
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1

Description

No Description!

Coordinates

chr2D:+:311548619..311550032

Molecular Weight (calculated)

41188.0 Da

IEP (calculated)

7.489

GRAVY (calculated)

-0.630

Length

374 amino acids

Sequence
(BLAST)

001: MAAAENAGDV AAGESRKLFV GGIPSSAQET ELRGHFARFG AVRSIVVMRD KESGHGRGFG FVEFEDEEAA AKALGDGERP KHFICGRLVD VKRARARPPR
101: NLGEQPVHQH QHQHQLEQGP VQGHQDAGDS TEASSDSMSY ASKKVFIGGL RDNITEEEFR AYFEAFGTVT DVVVIYDSLT SRSRGFGFVT FDSEEAVRKV
201: MGQSFHDLKG TRVEAKIAIP KDAQYYRNGR GRGSRTFGGR GPVGFDGSTY QPYNNRHGFY NGYMPQPVPT HPYYHGLYFG MGGNPYANAY PNHAVMANVP
301: NMVARRPVYS PYPPMYPGYG FAYRSGYAGA APSVQYGVNG GRDYMNDQDS MDVQELDSTA TIATKFEYMK LGSQ

Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.