Factsheet for TraesCS3D01G186500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G181900.1	Wheat	nucleus	98.54	98.54
TraesCS3B01G211700.1	Wheat	nucleus	92.92	98.45
HORVU3Hr1G037280.1	Barley	nucleus, plastid	93.33	91.8
Zm00001d040344_P001	Maize	extracellular, plasma membrane	66.46	70.26
Os01t0265800-01	Rice	nucleus	71.67	70.2
EES02736	Sorghum	plastid	65.83	68.1
CDX76015	Canola	nucleus	31.67	49.84
KRG94993	Soybean	nucleus	48.96	49.06
KRH66628	Soybean	nucleus	49.38	48.77
VIT_08s0056g00690.t01	Wine grape	nucleus	46.46	48.16
Solyc01g008970.2.1	Tomato	nucleus	37.5	47.87
Bra014667.1-P	Field mustard	nucleus	30.42	47.87
CDX72106	Canola	nucleus	45.21	47.69
CDY06947	Canola	nucleus	42.71	47.67
CDY27186	Canola	nucleus	44.58	47.66
Bra007277.1-P	Field mustard	nucleus	44.38	47.44
Bra016954.1-P	Field mustard	nucleus	42.71	46.59
AT2G41060.3	Thale cress	nucleus	43.75	46.56
AT3G56860.10	Thale cress	nucleus	45.83	46.03
CDY57580	Canola	nucleus	42.29	45.82
PGSC0003DMT400058431	Potato	nucleus	45.42	44.49
KRH14673	Soybean	nucleus	45.42	44.13
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	47.29	43.82
KRH73477	Soybean	nucleus	44.79	43.35
CDY47382	Canola	golgi, plastid	30.62	35.34
TraesCS3D01G232300.1	Wheat	nucleus	28.12	30.68
TraesCS2D01G529100.1	Wheat	nucleus	32.29	30.45
TraesCS6D01G272500.1	Wheat	nucleus	14.79	20.46
TraesCS6D01G173900.1	Wheat	nucleus	17.29	20.29
TraesCS7D01G281300.1	Wheat	nucleus	14.79	20.0
TraesCS7D01G180800.1	Wheat	nucleus	11.88	18.94
TraesCS7D01G362200.1	Wheat	nucleus	17.5	18.92
TraesCS4D01G225900.1	Wheat	nucleus	9.58	18.47
TraesCS4D01G152200.1	Wheat	nucleus	17.29	17.93
TraesCS1D01G237800.3	Wheat	cytosol	13.54	17.86
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	10.42	17.42
TraesCS3D01G380100.1	Wheat	nucleus	10.62	17.23
TraesCS3D01G480300.1	Wheat	cytosol	13.33	17.16
TraesCS6D01G258900.4	Wheat	plastid	10.21	17.01
TraesCS6D01G297300.1	Wheat	plastid	10.83	16.67
TraesCS2D01G197500.2	Wheat	nucleus	16.25	16.6
TraesCS5D01G415400.1	Wheat	nucleus	11.25	15.61
TraesCS4D01G198000.3	Wheat	cytosol	10.21	15.36
TraesCS1D01G147600.1	Wheat	nucleus	13.96	14.76
TraesCS3D01G505900.1	Wheat	mitochondrion	8.75	13.29
TraesCS2D01G256500.1	Wheat	nucleus	9.17	11.76

Protein Annotations

EnsemblPlants:TraesCS3D01G186500.1	EnsemblPlantsGene:TraesCS3D01G186500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	ncoils:Coil
PANTHER:PTHR44578	PANTHER:PTHR44578:SF4	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	TIGR:cd12384	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3D:-:172381778..172383220

Molecular Weight (calculated)

49431.1 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.415

Length

480 amino acids

Sequence
(BLAST)

001: MGKKRKLEPK STLAANSPAA KAPPAAKIAE PAAPPPQPET LAEYYPTPSQ TVAQESGSIA GGAAVKQEVG GEEDEWEEVE EEVEEEEEEE EVEEEEQQQA
101: EEGDSDPASI QALLEVFPKE QLVELLRDAA VRHGDVRESV RRAADADPAQ RKIFVHGLGW DTTVDILTEA FRPYGEIEDL KLVSDRNTGK CKGYGFILFS
201: RLSGARAALL EPQKKIGNRT TSCQLASLGP VPPGGAANNP MLATAPAPAP AALILPPVSE YTQRKIFVSN VGADIDPQKL LQFFSKYGEI EEGPLGLDKA
301: TGKPKGFALF VYRTLESAKK ALQEPHKSFE GVMLHCQKAI DGPKPNKGGG YGATTTSGRK GAAGYGASSH SLPGSVGAGY GMASPASLAS MPGSVPGGPG
401: MNPALGQALT AFLATQGGGL GLNNILGVGP NSSGVPNSGS SGALGGGGVP GMPGSYMGGY GGGGGYGGPP GGPGRNYMGH

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.