Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G181900.1 | Wheat | nucleus | 70.61 | 72.08 |
| TraesCS3D01G186500.1 | Wheat | nucleus | 70.2 | 71.67 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 66.12 | 71.52 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 69.8 | 70.08 |
| EES02736 | Sorghum | plastid | 64.69 | 68.32 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 63.06 | 68.06 |
| CDX76015 | Canola | nucleus | 31.43 | 50.49 |
| KRG94993 | Soybean | nucleus | 47.14 | 48.23 |
| Bra014667.1-P | Field mustard | nucleus | 30.0 | 48.2 |
| CDX72106 | Canola | nucleus | 44.49 | 47.91 |
| CDY27186 | Canola | nucleus | 43.88 | 47.88 |
| Bra007277.1-P | Field mustard | nucleus | 43.88 | 47.88 |
| Solyc01g008970.2.1 | Tomato | nucleus | 36.33 | 47.34 |
| KRH66628 | Soybean | nucleus | 46.94 | 47.33 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 44.69 | 47.3 |
| CDY06947 | Canola | nucleus | 41.02 | 46.74 |
| Bra016954.1-P | Field mustard | nucleus | 41.43 | 46.14 |
| AT2G41060.3 | Thale cress | nucleus | 42.45 | 46.12 |
| CDY57580 | Canola | nucleus | 41.63 | 46.05 |
| AT3G56860.10 | Thale cress | nucleus | 44.08 | 45.19 |
| KRH14673 | Soybean | nucleus | 44.29 | 43.93 |
| PGSC0003DMT400058431 | Potato | nucleus | 43.88 | 43.88 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 45.92 | 43.44 |
| KRH73477 | Soybean | nucleus | 43.67 | 43.15 |
| CDY47382 | Canola | golgi, plastid | 29.8 | 35.1 |
| Os01t0614500-01 | Rice | nucleus | 28.57 | 31.32 |
| Os04t0636900-02 | Rice | nucleus | 32.86 | 31.26 |
| Os02t0602600-00 | Rice | nucleus | 24.08 | 30.57 |
| Os02t0755400-01 | Rice | plastid | 10.61 | 29.55 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 14.08 | 23.63 |
| Os08t0320100-01 | Rice | nucleus | 16.12 | 22.57 |
| Os02t0221500-01 | Rice | nucleus | 16.94 | 20.91 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 11.22 | 20.0 |
| Os11t0637700-01 | Rice | plasma membrane | 17.76 | 18.63 |
| Os01t0945800-01 | Rice | nucleus | 13.67 | 18.46 |
| Os02t0714000-01 | Rice | nucleus, plastid | 10.61 | 18.12 |
| Os05t0376000-00 | Rice | cytosol | 7.35 | 17.22 |
| Os01t0876800-00 | Rice | nucleus | 10.41 | 17.0 |
| Os06t0220600-01 | Rice | plastid | 11.02 | 15.74 |
| Os07t0584500-01 | Rice | nucleus | 15.1 | 15.68 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 9.8 | 15.48 |
| Os01t0958500-01 | Rice | nucleus | 9.18 | 14.52 |
| Os07t0124600-01 | Rice | nucleus | 10.2 | 13.26 |
| Os08t0492100-02 | Rice | nucleus | 9.8 | 11.01 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4326212 | EMBL:AK099896 | EMBL:AK109487 | ProteinID:BAA90354.1 |
| ProteinID:BAS71462.1 | ProteinID:EAZ11348.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0265800 | EnsemblPlants:Os01t0265800-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44578 | PANTHER:PTHR44578:SF4 | UniProt:Q9LJ04 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A37AE | RefSeq:XP_015621304.1 | SEG:seg | : |
Description
RNA binding protein PRNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os01t0265800-01);RNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os01t0265800-02)
Coordinates
chr1:-:9063968..9066786
Molecular Weight (calculated)
49282.8 Da
IEP (calculated)
4.839
GRAVY (calculated)
-0.270
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKLDSK SPAAARSAAA RAAAAAAAAA AAAAVAEPSS QPEALAEDPA PSSQPLGLSS EGAGERMMSR EAGGGEEEEV EEVEVEEEVE VDEDEDGEGE
101: GEEEEEAAER DADSIQALLN SFPKDQLVEL LSAAALSHED VLTAVHRAAD ADPALRKIFV HGLGWDATAE TLTEAFSAYG EIEDLRVVTD RATGKCKGYG
201: FILFSRRSGA RAALREPQKK IGNRTTACQL ASVGPVPPGG MATNPAPAVA PAPAQLALPP VSEYTQRKIF VSNVGADIDP QKLLQFFSKY GEIEEGPLGL
301: DKVTGKPKGF ALFVYKTLDS AKKALQEPHK QFEGVVLHCQ KAIDGPKPNK GGGLGGLYGA GTSGGRKGAG GYGAHSHSLP GAAVGGHVMP SPVSSLTSLP
401: GVAGGPGVNP ALGQALTAIL ASQGGGLGLN NILGVGANGS GLPNPGASAG LGSSGLPGMP GAGGYLGGYG GGGGYGSTPP GGPGRNYMGH
101: GEEEEEAAER DADSIQALLN SFPKDQLVEL LSAAALSHED VLTAVHRAAD ADPALRKIFV HGLGWDATAE TLTEAFSAYG EIEDLRVVTD RATGKCKGYG
201: FILFSRRSGA RAALREPQKK IGNRTTACQL ASVGPVPPGG MATNPAPAVA PAPAQLALPP VSEYTQRKIF VSNVGADIDP QKLLQFFSKY GEIEEGPLGL
301: DKVTGKPKGF ALFVYKTLDS AKKALQEPHK QFEGVVLHCQ KAIDGPKPNK GGGLGGLYGA GTSGGRKGAG GYGAHSHSLP GAAVGGHVMP SPVSSLTSLP
401: GVAGGPGVNP ALGQALTAIL ASQGGGLGLN NILGVGANGS GLPNPGASAG LGSSGLPGMP GAGGYLGGYG GGGGYGSTPP GGPGRNYMGH
001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH
Arabidopsis Description
UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.