Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 6
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G258900.4 | Wheat | plastid | 84.32 | 84.03 |
| TraesCS6A01G278300.3 | Wheat | plastid | 84.32 | 82.88 |
| OQU85520 | Sorghum | nucleus, plastid | 84.67 | 82.37 |
| TraesCS6B01G306600.1 | Wheat | plastid | 77.35 | 77.89 |
| HORVU6Hr1G070150.1 | Barley | plastid | 43.21 | 74.25 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 84.32 | 72.89 |
| HORVU6Hr1G070140.3 | Barley | plastid | 36.24 | 66.67 |
| Zm00001d017829_P002 | Maize | plastid | 70.73 | 58.84 |
| Zm00001d051627_P002 | Maize | plastid | 73.87 | 57.61 |
| PGSC0003DMT400025900 | Potato | nucleus | 51.92 | 51.92 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.66 | 49.72 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 41.12 | 48.96 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 26.83 | 48.43 |
| AT5G53720.1 | Thale cress | cytosol | 16.72 | 48.0 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 43.9 | 45.82 |
| Os02t0755400-01 | Rice | plastid | 27.53 | 44.89 |
| CDY51790 | Canola | cytosol | 16.72 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.42 | 44.64 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 33.1 | 40.25 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 35.89 | 39.02 |
| KRH53608 | Soybean | nucleus | 32.75 | 38.21 |
| KRH64318 | Soybean | nucleus | 33.8 | 37.74 |
| AT5G53680.1 | Thale cress | cytosol | 21.6 | 36.69 |
| Os01t0876800-00 | Rice | nucleus | 36.59 | 35.0 |
| Os01t0958500-01 | Rice | nucleus | 35.89 | 33.23 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.21 | 33.14 |
| Os06t0220600-01 | Rice | plastid | 37.28 | 31.2 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 33.45 | 30.97 |
| Bra029612.1-P | Field mustard | nucleus | 19.51 | 19.51 |
| AT3G06970.1 | Thale cress | nucleus | 19.16 | 17.35 |
| CDY05301 | Canola | nucleus | 20.91 | 17.09 |
| CDY24657 | Canola | nucleus | 20.21 | 17.06 |
| CDX74070 | Canola | cytosol | 20.21 | 16.11 |
| CDY08023 | Canola | nucleus | 20.21 | 16.11 |
| Os02t0221500-01 | Rice | nucleus | 21.6 | 15.62 |
| Bra001228.1-P | Field mustard | cytosol | 19.51 | 15.47 |
| Os01t0614500-01 | Rice | nucleus | 24.04 | 15.44 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 14.29 | 14.04 |
| Os08t0320100-01 | Rice | nucleus | 17.07 | 14.0 |
| Os02t0602600-00 | Rice | nucleus | 17.42 | 12.95 |
| Os07t0584500-01 | Rice | nucleus | 20.91 | 12.71 |
| Os01t0945800-01 | Rice | nucleus | 16.03 | 12.67 |
| Os11t0637700-01 | Rice | plasma membrane | 19.16 | 11.78 |
| Os04t0636900-02 | Rice | nucleus | 19.86 | 11.07 |
| Os07t0124600-01 | Rice | nucleus | 14.29 | 10.88 |
| Os01t0265800-01 | Rice | nucleus | 18.12 | 10.61 |
| Os05t0376000-00 | Rice | cytosol | 6.97 | 9.57 |
| Os08t0492100-02 | Rice | nucleus | 11.15 | 7.34 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4330510 | EMBL:AK073538 | ProteinID:BAF09830.1 | ProteinID:BAS80589.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os02g0714000 |
| EnsemblPlants:Os02t0714000-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | UniProt:Q0DY58 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000DF083A | RefSeq:XP_015626303.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os02t0714000-01);Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os02t0714000-02);Hypothetical gene. (Os02t0714000-03)
Coordinates
chr2:+:29594623..29598898
Molecular Weight (calculated)
30611.6 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.375
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQQQQQGS GSGSASASSS SSGLHLLASP FGDTTYTKVF VGGLAWETTS ERLRRFYDRF GEILEAVVIT DRHSGRSKGY GFVTFRDPES ARKACEDPTP
101: VIDGRRANCN LASLGRAQPA VPLGRPRSAG SYFGVPVPRG VYVGGYGQHR TLPLGYYQGF PVPQYSYTTY GTEYIYPQGT LNPYVGQQYV PIYGVSSAAN
201: TASQPFSQFS PSISGGGNGY VAIHGYNVPG NPFVQLTGSN FSSASPTPRP TIQAPFLVAP VPTHPHLVLP AHSPQFTQAS GSDQRAS
101: VIDGRRANCN LASLGRAQPA VPLGRPRSAG SYFGVPVPRG VYVGGYGQHR TLPLGYYQGF PVPQYSYTTY GTEYIYPQGT LNPYVGQQYV PIYGVSSAAN
201: TASQPFSQFS PSISGGGNGY VAIHGYNVPG NPFVQLTGSN FSSASPTPRP TIQAPFLVAP VPTHPHLVLP AHSPQFTQAS GSDQRAS
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.