Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51790 | Canola | cytosol | 81.25 | 85.05 |
| AT5G53720.1 | Thale cress | cytosol | 67.86 | 76.0 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 45.54 | 32.08 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 41.96 | 31.13 |
| HORVU6Hr1G070140.3 | Barley | plastid | 40.18 | 28.85 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 44.64 | 28.25 |
| HORVU6Hr1G070150.1 | Barley | plastid | 41.07 | 27.54 |
| Os02t0755400-01 | Rice | plastid | 41.07 | 26.14 |
| Zm00001d052212_P001 | Maize | nucleus | 36.61 | 25.47 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 48.21 | 22.41 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 46.43 | 21.58 |
| CDY69197 | Canola | nucleus | 41.96 | 20.89 |
| KRH53608 | Soybean | nucleus | 45.54 | 20.73 |
| KRH64318 | Soybean | nucleus | 47.32 | 20.62 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 42.86 | 20.34 |
| CDY02889 | Canola | nucleus | 39.29 | 20.28 |
| CDY04769 | Canola | nucleus | 42.86 | 20.25 |
| CDY31859 | Canola | nucleus | 42.86 | 19.92 |
| CDX73279 | Canola | cytosol | 42.86 | 19.83 |
| CDY31508 | Canola | nucleus | 43.75 | 19.6 |
| CDY33653 | Canola | nucleus | 43.75 | 19.37 |
| CDY01349 | Canola | nucleus | 41.07 | 19.09 |
| CDX96615 | Canola | nucleus | 42.86 | 19.05 |
| CDY41556 | Canola | nucleus | 49.11 | 18.97 |
| CDY25759 | Canola | nucleus | 41.96 | 18.88 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 41.96 | 18.88 |
| CDY29496 | Canola | nucleus | 43.75 | 18.77 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 41.07 | 18.47 |
| CDX79253 | Canola | nucleus | 45.54 | 18.21 |
| CDX88283 | Canola | nucleus | 45.54 | 18.21 |
| PGSC0003DMT400025900 | Potato | nucleus | 46.43 | 18.12 |
| CDX88432 | Canola | nucleus | 45.54 | 17.96 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 46.43 | 17.93 |
| CDX87460 | Canola | nucleus | 45.54 | 17.89 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 43.75 | 17.82 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 41.96 | 17.8 |
| CDY46642 | Canola | nucleus | 45.54 | 17.65 |
| CDY64698 | Canola | nucleus | 41.07 | 17.62 |
| CDX73451 | Canola | cytosol | 39.29 | 17.6 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 43.75 | 17.56 |
| EER90058 | Sorghum | plastid | 44.64 | 17.48 |
| Os02t0714000-01 | Rice | nucleus, plastid | 44.64 | 17.42 |
| CDX80046 | Canola | nucleus | 49.11 | 17.41 |
| CDY41557 | Canola | nucleus | 49.11 | 17.41 |
| CDY21356 | Canola | nucleus | 44.64 | 17.24 |
| TraesCS6B01G306600.1 | Wheat | plastid | 43.75 | 17.19 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 41.96 | 17.15 |
| CDY27523 | Canola | nucleus | 49.11 | 17.03 |
| TraesCS6D01G258900.4 | Wheat | plastid | 43.75 | 17.01 |
| CDX78261 | Canola | nucleus | 39.29 | 16.99 |
| CDX68024 | Canola | nucleus | 42.86 | 16.96 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 42.86 | 16.96 |
| OQU85520 | Sorghum | nucleus, plastid | 44.64 | 16.95 |
| CDY48016 | Canola | nucleus | 49.11 | 16.87 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 41.07 | 16.85 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 42.86 | 16.84 |
| TraesCS6A01G278300.3 | Wheat | plastid | 43.75 | 16.78 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 42.86 | 16.72 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 44.64 | 16.72 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 44.64 | 16.61 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 43.75 | 16.33 |
| CDX87594 | Canola | nucleus | 46.43 | 16.25 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 43.75 | 16.12 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 41.96 | 15.99 |
| CDY00446 | Canola | nucleus | 46.43 | 15.29 |
| Os06t0220600-01 | Rice | plastid | 44.64 | 14.58 |
| Zm00001d017829_P002 | Maize | plastid | 44.64 | 14.49 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 42.86 | 14.46 |
| CDY67263 | Canola | nucleus | 41.96 | 14.33 |
| Zm00001d037209_P001 | Maize | plastid | 41.96 | 14.16 |
| CDX74070 | Canola | cytosol | 44.64 | 13.89 |
| CDY08023 | Canola | nucleus | 44.64 | 13.89 |
| KXG30724 | Sorghum | plastid | 38.39 | 13.87 |
| Zm00001d051627_P002 | Maize | plastid | 45.54 | 13.86 |
| CDY24657 | Canola | nucleus | 41.96 | 13.82 |
| Zm00001d046716_P001 | Maize | nucleus | 43.75 | 13.61 |
| TraesCS6B01G348100.1 | Wheat | plastid | 37.5 | 13.5 |
| TraesCS6D01G297300.1 | Wheat | plastid | 37.5 | 13.46 |
| CDY13782 | Canola | nucleus | 36.61 | 13.36 |
| OQU76075 | Sorghum | plastid | 41.96 | 13.31 |
| CDX76950 | Canola | nucleus | 36.61 | 13.31 |
| HORVU6Hr1G078060.1 | Barley | plastid | 37.5 | 13.29 |
| Zm00001d018103_P002 | Maize | plasma membrane | 37.5 | 13.21 |
| CDY05301 | Canola | nucleus | 40.18 | 12.82 |
| CDX76015 | Canola | nucleus | 28.57 | 10.49 |
| CDX75170 | Canola | extracellular | 15.18 | 10.43 |
| CDY55846 | Canola | nucleus | 35.71 | 9.98 |
| CDY25867 | Canola | nucleus | 35.71 | 9.88 |
| CDY06947 | Canola | nucleus | 36.61 | 9.53 |
| CDY24106 | Canola | nucleus | 34.82 | 9.44 |
| CDY26001 | Canola | nucleus | 33.93 | 9.34 |
| CDY57580 | Canola | nucleus | 36.61 | 9.26 |
| CDY15850 | Canola | nucleus | 30.36 | 9.19 |
| CDY27186 | Canola | nucleus | 36.61 | 9.13 |
| CDX72106 | Canola | nucleus | 36.61 | 9.01 |
| CDY26229 | Canola | nucleus | 29.46 | 8.89 |
| CDY48318 | Canola | nucleus | 29.46 | 8.87 |
| CDY37724 | Canola | nucleus | 25.0 | 8.67 |
| CDY47382 | Canola | golgi, plastid | 32.14 | 8.65 |
| CDY50131 | Canola | nucleus | 29.46 | 8.64 |
| CDX69279 | Canola | nucleus | 17.86 | 8.47 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 36.61 | 8.42 |
| CDY11989 | Canola | nucleus | 32.14 | 8.33 |
| CDY17173 | Canola | nucleus | 27.68 | 8.22 |
| CDY67299 | Canola | nucleus | 27.68 | 8.14 |
| CDY12068 | Canola | nucleus | 25.89 | 8.1 |
| CDY36753 | Canola | nucleus | 31.25 | 8.05 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 25.89 | 7.99 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 25.89 | 7.97 |
| CDY46690 | Canola | nucleus | 30.36 | 7.94 |
| CDX94301 | Canola | nucleus | 31.25 | 7.92 |
| CDX90262 | Canola | nucleus | 26.79 | 7.85 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 24.11 | 7.8 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 28.57 | 7.79 |
| CDY24201 | Canola | nucleus | 25.0 | 7.73 |
| CDX89316 | Canola | endoplasmic reticulum | 30.36 | 7.61 |
| CDX92807 | Canola | nucleus | 30.36 | 7.56 |
| CDY46689 | Canola | nucleus | 30.36 | 7.34 |
| CDY23739 | Canola | nucleus | 25.0 | 7.31 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 26.79 | 7.23 |
| CDY43360 | Canola | nucleus | 23.21 | 7.18 |
| CDY42724 | Canola | cytosol | 24.11 | 7.12 |
| CDY69852 | Canola | cytosol | 24.11 | 7.07 |
| CDY41059 | Canola | nucleus | 26.79 | 7.03 |
| CDX77783 | Canola | nucleus | 25.89 | 6.82 |
| CDY07975 | Canola | nucleus | 28.57 | 6.79 |
| CDX74030 | Canola | nucleus | 28.57 | 6.78 |
| CDX79527 | Canola | nucleus | 24.11 | 6.65 |
| CDX84689 | Canola | nucleus | 24.11 | 6.62 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 21.43 | 6.61 |
| CDY22136 | Canola | nucleus | 28.57 | 6.58 |
| CDY66272 | Canola | nucleus | 28.57 | 6.54 |
| CDY35966 | Canola | nucleus | 28.57 | 6.48 |
| CDY28918 | Canola | mitochondrion | 26.79 | 6.2 |
| CDY25957 | Canola | nucleus | 26.79 | 5.42 |
| CDY36357 | Canola | nucleus | 25.0 | 5.17 |
| CDY42577 | Canola | nucleus | 25.0 | 5.14 |
| CDY40554 | Canola | nucleus | 26.79 | 4.57 |
| CDY13339 | Canola | mitochondrion | 5.36 | 3.57 |
| CDY21399 | Canola | mitochondrion | 1.79 | 1.38 |
| CDX69277 | Canola | mitochondrion | 0.89 | 0.54 |
Protein Annotations
| EnsemblPlants:CDY28822 | EnsemblPlantsGene:GSBRNA2T00041484001 | Gene3D:3.30.70.330 | GO:A0A078GUQ8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY28822 | ProteinID:CDY28822.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE4A29 | UniProt:A0A078GUQ8 | MapMan:35.1 | : |
Description
BnaA02g10140DBnaA02g10140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUQ8]
Coordinates
chrLK032226:-:486702..487126
Molecular Weight (calculated)
12642.0 Da
IEP (calculated)
8.312
GRAVY (calculated)
-0.357
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLPNDIETK IYVAGLPWIT KTESLRNYFE QFGEIVYANV VCDRATKRSK GFGFITFKEA ESANRACEDP NPTIDGRKTS CKLAYLGARV HNNQSNENGL
101: VSIFPYLINC LR
101: VSIFPYLINC LR
1: MSHPNDRETK IYVAGLPWIT RTEGLISYFE RFGEIVYAKV VCDGATQRSK GFGFVTFREV ESATRACENP NHTIDGRTVN CKLAYLGARV HNYQPNQYGY
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FI04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.