Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 98.59 | 97.89 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 98.94 | 97.56 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 87.28 | 89.82 |
| EER90058 | Sorghum | plastid | 87.28 | 86.36 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 83.04 | 84.23 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 87.28 | 84.01 |
| Zm00001d046716_P001 | Maize | nucleus | 80.57 | 63.33 |
| AT5G53720.1 | Thale cress | cytosol | 17.31 | 49.0 |
| PGSC0003DMT400025900 | Potato | nucleus | 48.76 | 48.08 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 28.98 | 46.33 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 38.87 | 45.64 |
| CDY51790 | Canola | cytosol | 16.96 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.96 | 42.86 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 24.03 | 42.77 |
| TraesCS6A01G278300.3 | Wheat | plastid | 41.7 | 40.41 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 40.28 | 38.38 |
| KRH53608 | Soybean | nucleus | 32.51 | 37.4 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 31.1 | 37.29 |
| KRH64318 | Soybean | nucleus | 32.86 | 36.19 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.57 | 35.98 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 30.74 | 34.94 |
| AT5G53680.1 | Thale cress | cytosol | 20.85 | 34.91 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 36.75 | 33.33 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 35.69 | 33.22 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.49 | 33.14 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 33.57 | 31.56 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 37.1 | 21.56 |
| Bra029612.1-P | Field mustard | nucleus | 18.37 | 18.12 |
| AT3G06970.1 | Thale cress | nucleus | 19.08 | 17.03 |
| CDY05301 | Canola | nucleus | 19.79 | 15.95 |
| CDY24657 | Canola | nucleus | 19.08 | 15.88 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 24.03 | 15.45 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 20.14 | 14.21 |
| CDY08023 | Canola | nucleus | 18.02 | 14.17 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 20.49 | 14.04 |
| CDX74070 | Canola | cytosol | 17.67 | 13.89 |
| Bra001228.1-P | Field mustard | cytosol | 17.31 | 13.54 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 15.9 | 13.2 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 16.25 | 13.14 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 21.2 | 12.96 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 16.61 | 12.88 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 20.49 | 12.78 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 16.61 | 12.6 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 15.19 | 11.56 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 19.43 | 10.81 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 17.67 | 10.42 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 13.07 | 10.31 |
| TraesCS2A01G190400.1 | Wheat | plastid | 19.08 | 10.17 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G398200.1 | EnsemblPlantsGene:TraesCS7A01G398200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:577223067..577225823
Molecular Weight (calculated)
29993.4 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.402
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTPQRSPAV MAGGGGGGGG GGGGTPALHY LSGPYGDTTY TKVFVGGLAW ETRSEGLRAH FEAYGDILEA VVITDRATGR SKGYGFVTFR DPDSARMACM
101: DPYPVIDGRR ANCNLAILGR PGPAVPFGPI RPVIPYNGGA AVPGGMYVPS PTYQQPPYNY SQALVYPPYG PSTYGPEYLY PQNAYGPYVG QQYVPVYGGP
201: RTVGPAVYPY GQFGQPVPSD HSYSPGYVPG HLLPLSNQNA ANARASAVQQ QYPPGAPRPQ QQLLLPARVQ QFPPNNVSEQ MSG
101: DPYPVIDGRR ANCNLAILGR PGPAVPFGPI RPVIPYNGGA AVPGGMYVPS PTYQQPPYNY SQALVYPPYG PSTYGPEYLY PQNAYGPYVG QQYVPVYGGP
201: RTVGPAVYPY GQFGQPVPSD HSYSPGYVPG HLLPLSNQNA ANARASAVQQ QYPPGAPRPQ QQLLLPARVQ QFPPNNVSEQ MSG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.