Factsheet for TraesCS5A01G405300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G415400.1	Wheat	nucleus	79.11	82.08
TraesCS5B01G410100.1	Wheat	nucleus	78.27	80.06
HORVU5Hr1G098440.5	Barley	cytosol, nucleus	76.6	75.97
TraesCS2A01G267500.1	Wheat	nucleus	39.83	38.44
GSMUA_Achr4P32300_001	Banana	nucleus	10.86	26.53
GSMUA_Achr4P28100_001	Banana	nucleus	32.31	26.24
GSMUA_Achr7P00730_001	Banana	cytosol	11.7	23.2
TraesCS1A01G150600.1	Wheat	nucleus	27.86	22.03
TraesCS6A01G291100.1	Wheat	nucleus	20.06	21.11
TraesCS7A01G282600.1	Wheat	cytosol	20.06	20.57
TraesCS4A01G150600.1	Wheat	nucleus	26.46	20.52
TraesCS7A01G360900.1	Wheat	nucleus	21.17	18.95
TraesCS6A01G187000.1	Wheat	nucleus	21.45	18.64
TraesCS1A01G234200.1	Wheat	cytosol	18.94	18.63
TraesCS3A01G485000.1	Wheat	cytosol	18.38	17.69
TraesCS2A01G190400.1	Wheat	plastid	25.35	17.14
TraesCS3A01G389600.1	Wheat	nucleus	11.42	13.8
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	10.31	13.07
TraesCS3A01G220400.1	Wheat	nucleus	15.88	12.95
TraesCS6A01G278300.3	Wheat	plastid	10.31	12.67
TraesCS3A01G181900.1	Wheat	nucleus	16.16	12.08
TraesCS4A01G068100.1	Wheat	nucleus	8.36	12.05
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	10.03	11.54
TraesCS2A01G526400.1	Wheat	nucleus	15.88	11.2
TraesCS7A01G178700.2	Wheat	nucleus	9.19	10.86
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	8.08	9.63
TraesCS6A01G318100.1	Wheat	nucleus	10.59	7.8
CDX69277	Canola	mitochondrion	3.9	7.53

Protein Annotations

EnsemblPlants:TraesCS5A01G405300.1	EnsemblPlantsGene:TraesCS5A01G405300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44291
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1

Description

No Description!

Coordinates

chr5A:+:596660427..596664232

Molecular Weight (calculated)

40637.5 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.714

Length

359 amino acids

Sequence
(BLAST)

001: MALETRKLYV GGLLPSAQQE ELKEHFSRYG EVLCVRVVRD WESDQCRGFA FVEFADDEGP RAALHEKEKA NHVFGGRTVD VKRARIRPMR YENDSSFYQH
101: TSNHSPIQSP VHNQWYTQSS SNNSYVGNGH RSYDAKKVFV GGLRGNITKE HLQSYFEKFG TITDVVVIRE GATQKSRGFG FITFDSEEAM AKVLESKFHD
201: LNGTKVETKI AIPKDHSYYQ DGRQYGPMIW DGNNSPIGYA GVYPPQMQYV INNHYMIPIP QYMYSPAGEY GYMMNGGGPL TRQGPLYTGY PTPVGYGYNY
301: MNTNRFGAQI VDSRSGNKMI EDITEQQQVE QQQVDLPGTN NISKQETSGI DDQATVTTL

Best Arabidopsis Sequence Match ( AT5G55550.1 )
(BLAST)

001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G55550]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.