Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 20.4 | 91.04 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 86.62 | 86.05 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 83.95 | 83.67 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 83.95 | 82.57 |
| Os06t0220600-01 | Rice | plastid | 65.55 | 57.14 |
| Zm00001d037209_P001 | Maize | plastid | 62.88 | 56.63 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 30.1 | 56.6 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 33.11 | 55.93 |
| OQU76075 | Sorghum | plastid | 65.22 | 55.24 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 38.46 | 48.73 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 42.81 | 48.48 |
| AT5G53720.1 | Thale cress | cytosol | 16.05 | 48.0 |
| CDY51790 | Canola | cytosol | 16.72 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.72 | 44.64 |
| HORVU6Hr1G070140.3 | Barley | plastid | 22.74 | 43.59 |
| HORVU6Hr1G070150.1 | Barley | plastid | 24.08 | 43.11 |
| HORVU6Hr1G078060.1 | Barley | plastid | 45.48 | 43.04 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 28.43 | 35.27 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.78 | 35.19 |
| KRH53608 | Soybean | nucleus | 27.76 | 33.74 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 19.06 | 32.57 |
| AT5G53680.1 | Thale cress | cytosol | 18.39 | 32.54 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 31.77 | 32.31 |
| KRH64318 | Soybean | nucleus | 27.09 | 31.52 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 28.09 | 30.66 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 31.44 | 30.03 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 33.11 | 29.82 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 30.1 | 29.03 |
| Bra029612.1-P | Field mustard | nucleus | 16.39 | 17.07 |
| AT3G06970.1 | Thale cress | nucleus | 18.06 | 17.03 |
| HORVU6Hr1G054690.5 | Barley | plastid | 10.03 | 15.96 |
| CDY05301 | Canola | nucleus | 17.73 | 15.1 |
| CDY24657 | Canola | nucleus | 17.06 | 15.0 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 20.4 | 13.83 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 17.06 | 13.75 |
| CDY08023 | Canola | nucleus | 16.39 | 13.61 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 18.39 | 13.29 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 17.73 | 13.28 |
| CDX74070 | Canola | cytosol | 15.38 | 12.78 |
| Bra001228.1-P | Field mustard | cytosol | 15.38 | 12.71 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 15.05 | 12.36 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 14.38 | 12.15 |
| HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 19.06 | 11.68 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 17.39 | 11.23 |
| HORVU6Hr1G040220.5 | Barley | plastid | 17.39 | 11.21 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 13.71 | 11.02 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 12.37 | 10.22 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 15.38 | 9.02 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 8.7 | 6.4 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G036920.2 | EnsemblPlantsGene:HORVU7Hr1G036920 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B4621CF | UniProt:A0A287W2T5 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:87617936..87622250
Molecular Weight (calculated)
31650.0 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.541
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXSTAS AYRSRFGDTT QTKVFVGGLA WETPSEGLRQ HFEQYGDILE AVVITDRLTG RSKGYGFVTF REAEAARRAV EDPNPTITGR RANCNIASLG
101: PPRPAQPRGR PSPGGYWQQG PQYYIASPRA HPQQQQQMGL MLSPGHGPAI YHHHHPSQQY GYGYWCPPDY QYQQAMMSPQ VLQNYYAQLY AGLASPTAPP
201: PYHQYVGYVP APTPRAAVLS PVAQQVAAGQ PYVPHPAAAA QMQGFSMQVP SLPHNFALQL PSHAVSLLPP NATDMQSAGG QASSAAAPTN ANNAQQQGA
101: PPRPAQPRGR PSPGGYWQQG PQYYIASPRA HPQQQQQMGL MLSPGHGPAI YHHHHPSQQY GYGYWCPPDY QYQQAMMSPQ VLQNYYAQLY AGLASPTAPP
201: PYHQYVGYVP APTPRAAVLS PVAQQVAAGQ PYVPHPAAAA QMQGFSMQVP SLPHNFALQL PSHAVSLLPP NATDMQSAGG QASSAAAPTN ANNAQQQGA
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.