Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G267500.1 | Wheat | nucleus | 93.82 | 93.82 |
TraesCS2D01G256500.1 | Wheat | nucleus | 94.09 | 93.58 |
Os07t0124600-01 | Rice | nucleus | 72.04 | 71.09 |
EER95824 | Sorghum | cytosol | 68.28 | 66.67 |
Zm00001d018730_P001 | Maize | nucleus | 65.59 | 65.24 |
Zm00001d007839_P001 | Maize | cytosol | 64.78 | 65.14 |
HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 38.98 | 40.06 |
GSMUA_Achr4P32300_001 | Banana | nucleus | 11.02 | 27.89 |
HORVU7Hr1G036900.1 | Barley | cytosol, plastid | 4.57 | 25.37 |
GSMUA_Achr4P28100_001 | Banana | nucleus | 30.11 | 25.34 |
HORVU7Hr1G060930.1 | Barley | plasma membrane | 23.92 | 25.14 |
GSMUA_Achr7P00730_001 | Banana | cytosol | 11.83 | 24.31 |
HORVU0Hr1G008280.1 | Barley | nucleus | 28.49 | 22.89 |
HORVU1Hr1G039790.1 | Barley | nucleus | 30.91 | 22.55 |
HORVU7Hr1G087550.1 | Barley | nucleus | 23.66 | 22.06 |
HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 21.24 | 21.29 |
HORVU1Hr1G057660.1 | Barley | cytosol | 20.7 | 21.15 |
HORVU6Hr1G040220.5 | Barley | plastid | 26.08 | 20.91 |
HORVU6Hr1G070150.1 | Barley | plastid | 9.14 | 20.36 |
HORVU6Hr1G070140.3 | Barley | plastid | 8.06 | 19.23 |
HORVU6Hr1G054690.5 | Barley | plastid | 9.14 | 18.09 |
HORVU4Hr1G063360.1 | Barley | nucleus | 11.83 | 16.06 |
HORVU3Hr1G053990.1 | Barley | nucleus | 17.47 | 14.74 |
HORVU7Hr1G093450.6 | Barley | nucleus | 11.56 | 14.63 |
HORVU6Hr1G078060.1 | Barley | plastid | 12.1 | 14.24 |
HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 11.83 | 14.06 |
HORVU2Hr1G116150.4 | Barley | nucleus | 15.59 | 14.01 |
HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 11.02 | 13.71 |
HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 12.1 | 13.55 |
HORVU4Hr1G057110.23 | Barley | nucleus | 10.75 | 12.9 |
HORVU3Hr1G037280.1 | Barley | nucleus, plastid | 12.63 | 9.63 |
HORVU2Hr1G116230.1 | Barley | nucleus | 9.14 | 8.37 |
CDX69277 | Canola | mitochondrion | 4.03 | 8.06 |
Protein Annotations
EnsemblPlants:HORVU2Hr1G061380.2 | EnsemblPlantsGene:HORVU2Hr1G061380 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
UniParc:UPI0002958C49 | UniProt:M0YNE1 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:413084032..413090142
Molecular Weight (calculated)
40795.7 Da
IEP (calculated)
7.870
GRAVY (calculated)
-0.579
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MATATVENSG DVAAGESRKL FVGGIPSSAQ ETELRGHFAR FGVVRSIVVM RDKESGHGRG FGFVEFEDEE AAAKALGDGE RPKHFICGRL VDVKRARARP
101: PRNLGEQPAH QHQHQVEQGL VQGHQGAGAE ASGDSMSYAS KKVFVGGLRD NITEEEFRAY FEAFGTVTDV VVIYDSLTSR SRGFGFVTFD SEEAVRKVMG
201: QSFHDLKGTR VEAKIAIPKD AQYYHNGRGR GSRTFGGRGP VGFDGSTYQP YNNRHGFYNG YMPQPVPTHP YYPGLYFGMG GNPYANAYPN HGVMANVPNM
301: MTRRPVYSPY PPMYPGYGFA YRSGYAGAVP SVQYGINGGR DYMNDQDSMD AQEVDSAATI ATKFEYMKLG SQ
101: PRNLGEQPAH QHQHQVEQGL VQGHQGAGAE ASGDSMSYAS KKVFVGGLRD NITEEEFRAY FEAFGTVTDV VVIYDSLTSR SRGFGFVTFD SEEAVRKVMG
201: QSFHDLKGTR VEAKIAIPKD AQYYHNGRGR GSRTFGGRGP VGFDGSTYQP YNNRHGFYNG YMPQPVPTHP YYPGLYFGMG GNPYANAYPN HGVMANVPNM
301: MTRRPVYSPY PPMYPGYGFA YRSGYAGAVP SVQYGINGGR DYMNDQDSMD AQEVDSAATI ATKFEYMKLG SQ
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.