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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G267500.1 Wheat nucleus 93.82 93.82
TraesCS2D01G256500.1 Wheat nucleus 94.09 93.58
Os07t0124600-01 Rice nucleus 72.04 71.09
EER95824 Sorghum cytosol 68.28 66.67
Zm00001d018730_P001 Maize nucleus 65.59 65.24
Zm00001d007839_P001 Maize cytosol 64.78 65.14
HORVU5Hr1G098440.5 Barley cytosol, nucleus 38.98 40.06
GSMUA_Achr4P32300_001 Banana nucleus 11.02 27.89
HORVU7Hr1G036900.1 Barley cytosol, plastid 4.57 25.37
GSMUA_Achr4P28100_001 Banana nucleus 30.11 25.34
HORVU7Hr1G060930.1 Barley plasma membrane 23.92 25.14
GSMUA_Achr7P00730_001 Banana cytosol 11.83 24.31
HORVU0Hr1G008280.1 Barley nucleus 28.49 22.89
HORVU1Hr1G039790.1 Barley nucleus 30.91 22.55
HORVU7Hr1G087550.1 Barley nucleus 23.66 22.06
HORVU3Hr1G105930.10 Barley cytoskeleton, cytosol, nucleus 21.24 21.29
HORVU1Hr1G057660.1 Barley cytosol 20.7 21.15
HORVU6Hr1G040220.5 Barley plastid 26.08 20.91
HORVU6Hr1G070150.1 Barley plastid 9.14 20.36
HORVU6Hr1G070140.3 Barley plastid 8.06 19.23
HORVU6Hr1G054690.5 Barley plastid 9.14 18.09
HORVU4Hr1G063360.1 Barley nucleus 11.83 16.06
HORVU3Hr1G053990.1 Barley nucleus 17.47 14.74
HORVU7Hr1G093450.6 Barley nucleus 11.56 14.63
HORVU6Hr1G078060.1 Barley plastid 12.1 14.24
HORVU3Hr1G110370.1 Barley cytosol, mitochondrion, nucleus 11.83 14.06
HORVU2Hr1G116150.4 Barley nucleus 15.59 14.01
HORVU7Hr1G036920.2 Barley mitochondrion, nucleus 11.02 13.71
HORVU6Hr1G070170.1 Barley mitochondrion, nucleus, plastid 12.1 13.55
HORVU4Hr1G057110.23 Barley nucleus 10.75 12.9
HORVU3Hr1G037280.1 Barley nucleus, plastid 12.63 9.63
HORVU2Hr1G116230.1 Barley nucleus 9.14 8.37
CDX69277 Canola mitochondrion 4.03 8.06
Protein Annotations
EnsemblPlants:HORVU2Hr1G061380.2EnsemblPlantsGene:HORVU2Hr1G061380Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR44291PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360SUPFAM:SSF54928
UniParc:UPI0002958C49UniProt:M0YNE1MapMan:35.1:::
Description
No Description!
Coordinates
chrchr2H:-:413084032..413090142
Molecular Weight (calculated)
40795.7 Da
IEP (calculated)
7.870
GRAVY (calculated)
-0.579
Length
372 amino acids
Sequence
(BLAST)
001: MATATVENSG DVAAGESRKL FVGGIPSSAQ ETELRGHFAR FGVVRSIVVM RDKESGHGRG FGFVEFEDEE AAAKALGDGE RPKHFICGRL VDVKRARARP
101: PRNLGEQPAH QHQHQVEQGL VQGHQGAGAE ASGDSMSYAS KKVFVGGLRD NITEEEFRAY FEAFGTVTDV VVIYDSLTSR SRGFGFVTFD SEEAVRKVMG
201: QSFHDLKGTR VEAKIAIPKD AQYYHNGRGR GSRTFGGRGP VGFDGSTYQP YNNRHGFYNG YMPQPVPTHP YYPGLYFGMG GNPYANAYPN HGVMANVPNM
301: MTRRPVYSPY PPMYPGYGFA YRSGYAGAVP SVQYGINGGR DYMNDQDSMD AQEVDSAATI ATKFEYMKLG SQ
Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.