Factsheet for Zm00001d007839_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95824	Sorghum	cytosol	83.51	81.1
Zm00001d018730_P001	Maize	nucleus	78.11	77.27
HORVU2Hr1G061380.2	Barley	nucleus	65.14	64.78
TraesCS2D01G256500.1	Wheat	nucleus	64.59	63.9
TraesCS2A01G267500.1	Wheat	nucleus	64.05	63.71
Os07t0124600-01	Rice	nucleus	62.7	61.54
Zm00001d034200_P001	Maize	nucleus	21.35	46.2
Zm00001d034201_P001	Maize	nucleus	28.92	42.63
GSMUA_Achr4P32300_001	Banana	nucleus	11.35	28.57
Zm00001d030579_P001	Maize	mitochondrion	25.41	27.01
GSMUA_Achr7P00730_001	Banana	cytosol	12.97	26.52
Zm00001d032739_P001	Maize	nucleus	31.62	26.41
GSMUA_Achr4P28100_001	Banana	nucleus	31.35	26.24
Zm00001d016349_P002	Maize	nucleus	25.41	24.48
Zm00001d019079_P001	Maize	cytosol	29.46	24.33
Zm00001d014058_P002	Maize	plastid	31.62	24.27
Zm00001d011885_P008	Maize	cytosol	23.24	23.89
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	24.59	23.76
Zm00001d036966_P001	Maize	nucleus, plasma membrane	26.22	23.49
Zm00001d007772_P001	Maize	nucleus	28.38	23.39
Zm00001d052212_P001	Maize	nucleus	10.0	22.98
Zm00001d046190_P001	Maize	extracellular	25.95	22.97
Zm00001d006704_P002	Maize	nucleus	29.73	22.73
Zm00001d019084_P002	Maize	nucleus	27.57	22.47
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	30.54	20.89
Zm00001d019086_P001	Maize	nucleus	28.38	19.74
Zm00001d042641_P001	Maize	nucleus	13.78	17.29
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	12.7	16.85
Zm00001d053572_P002	Maize	cytosol	24.86	16.76
Zm00001d018103_P002	Maize	plasma membrane	13.51	15.72
Zm00001d046716_P001	Maize	nucleus	14.86	15.28
Zm00001d042133_P003	Maize	cytosol	16.22	15.08
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	13.51	14.71
Zm00001d047753_P001	Maize	cytosol, mitochondrion, nucleus	10.81	14.34
Zm00001d044469_P003	Maize	nucleus	17.3	14.32
Zm00001d042042_P001	Maize	nucleus	12.97	14.12
Zm00001d037209_P001	Maize	plastid	12.43	13.86
Zm00001d011336_P002	Maize	nucleus	16.49	13.62
Zm00001d028714_P001	Maize	cytosol, nucleus, plasma membrane	10.54	13.13
Zm00001d002141_P006	Maize	nucleus	17.57	12.48
Zm00001d026397_P001	Maize	nucleus, plasma membrane	17.57	12.48
Zm00001d017829_P002	Maize	plastid	11.35	12.17
Zm00001d040344_P001	Maize	extracellular, plasma membrane	14.05	11.45
Zm00001d051627_P002	Maize	plastid	10.81	10.87
CDX69277	Canola	mitochondrion	4.86	9.68

Protein Annotations

EntrezGene:100192067	Gene3D:3.30.70.330	MapMan:35.1	UniProt:B4FB73	EMBL:BT034361	EMBL:BT067554
EMBL:EU957774	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0019013	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM27721.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B63C9	EnsemblPlantsGene:Zm00001d007839	EnsemblPlants:Zm00001d007839_P001
EnsemblPlants:Zm00001d007839_T001	SEG:seg	:	:	:	:

Description

RNA-binding protein 1

Coordinates

chr2:+:240606690..240609986

Molecular Weight (calculated)

40656.1 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.698

Length

370 amino acids

Sequence
(BLAST)

001: MEDAAESRKL FVGGIPAGAQ EADLRAHFAR FGEVRSVVVM RDRETGHGRG FGFVEFEDKA AAAAAAALGD ADRPRHFLCG RAVDVKRARA RAPRNQREQH
101: SQPHQVEQGL DQGNQDNQYP MGNGTADSGD NVNYGSKKVF VGGLQDDTTE EEFRAYFETF GTVTDVAVIY DSATNRSRGF GFVTFDSEEA VGKVMRQSFH
201: DLNGTKVEAK IAIPKDEQYY RNRGRGARSS GGRVPAGYEG SMYQPPYNAG YGSYNGYMPQ PVHVQPYFPA PYFPVAGYPY GSGYPSQVVM ANAPDMMSRW
301: VPPAYGNYPQ MYPWYILYRA GYGGPATSFQ HGINGGGADN KKDQTNVDMQ QADNTSSVTT MLEHMKLGSQ

Best Arabidopsis Sequence Match ( AT1G58470.1 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.