Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12939 | Sorghum | nucleus | 93.67 | 92.6 |
| Zm00001d002141_P006 | Maize | nucleus | 87.72 | 87.72 |
| Os04t0636900-02 | Rice | nucleus | 78.89 | 79.81 |
| HORVU2Hr1G116150.4 | Barley | nucleus | 61.8 | 77.78 |
| TraesCS2D01G529100.1 | Wheat | nucleus | 75.24 | 77.01 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 74.86 | 76.62 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 74.66 | 76.42 |
| HORVU2Hr1G116230.1 | Barley | nucleus | 50.1 | 64.29 |
| GSMUA_Achr10P... | Banana | nucleus | 21.5 | 48.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.7 | 43.36 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 34.36 | 40.5 |
| Solyc01g008970.2.1 | Tomato | nucleus | 25.72 | 35.64 |
| CDY06947 | Canola | nucleus | 28.98 | 35.12 |
| KRG94993 | Soybean | nucleus | 32.25 | 35.07 |
| CDY27186 | Canola | nucleus | 30.13 | 34.97 |
| Bra007277.1-P | Field mustard | nucleus | 30.13 | 34.97 |
| CDX72106 | Canola | nucleus | 30.52 | 34.95 |
| KRH66628 | Soybean | nucleus | 32.25 | 34.57 |
| Bra016954.1-P | Field mustard | nucleus | 28.98 | 34.32 |
| CDY57580 | Canola | nucleus | 29.17 | 34.31 |
| CDX76015 | Canola | nucleus | 19.96 | 34.1 |
| Bra014667.1-P | Field mustard | nucleus | 19.77 | 33.77 |
| AT2G41060.3 | Thale cress | nucleus | 28.98 | 33.48 |
| AT3G56860.10 | Thale cress | nucleus | 30.71 | 33.47 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 28.98 | 33.26 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 28.98 | 32.61 |
| Zm00001d011336_P002 | Maize | nucleus | 27.64 | 32.14 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 31.86 | 32.05 |
| PGSC0003DMT400058431 | Potato | nucleus | 29.94 | 31.84 |
| Zm00001d044469_P003 | Maize | nucleus | 27.26 | 31.77 |
| KRH73477 | Soybean | nucleus | 29.94 | 31.45 |
| KRH14673 | Soybean | nucleus | 29.75 | 31.38 |
| Zm00001d052212_P001 | Maize | nucleus | 8.64 | 27.95 |
| Zm00001d034200_P001 | Maize | nucleus | 8.45 | 25.73 |
| CDY47382 | Canola | golgi, plastid | 20.35 | 25.48 |
| Zm00001d034201_P001 | Maize | nucleus | 9.6 | 19.92 |
| Zm00001d011885_P008 | Maize | cytosol | 13.63 | 19.72 |
| Zm00001d016349_P002 | Maize | nucleus | 13.82 | 18.75 |
| Zm00001d042641_P001 | Maize | nucleus | 10.56 | 18.64 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 9.6 | 17.92 |
| Zm00001d007839_P001 | Maize | cytosol | 12.48 | 17.57 |
| Zm00001d018730_P001 | Maize | nucleus | 12.48 | 17.38 |
| Zm00001d018103_P002 | Maize | plasma membrane | 10.56 | 17.3 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 8.83 | 16.49 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 12.09 | 16.45 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 9.21 | 16.16 |
| Zm00001d019079_P001 | Maize | cytosol | 13.82 | 16.07 |
| Zm00001d032739_P001 | Maize | nucleus | 13.63 | 16.03 |
| Zm00001d017829_P002 | Maize | plastid | 10.56 | 15.94 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 10.36 | 15.88 |
| Zm00001d019084_P002 | Maize | nucleus | 13.82 | 15.86 |
| Zm00001d007772_P001 | Maize | nucleus | 13.63 | 15.81 |
| Zm00001d030579_P001 | Maize | mitochondrion | 10.56 | 15.8 |
| Zm00001d046190_P001 | Maize | extracellular | 12.67 | 15.79 |
| Zm00001d037209_P001 | Maize | plastid | 9.98 | 15.66 |
| Zm00001d042042_P001 | Maize | nucleus | 10.17 | 15.59 |
| Zm00001d046716_P001 | Maize | nucleus | 10.75 | 15.56 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 12.28 | 15.5 |
| Zm00001d014058_P002 | Maize | plastid | 13.82 | 14.94 |
| Zm00001d006704_P002 | Maize | nucleus | 13.63 | 14.67 |
| Zm00001d051627_P002 | Maize | plastid | 10.17 | 14.4 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 14.01 | 13.49 |
| Zm00001d019086_P001 | Maize | nucleus | 13.44 | 13.16 |
| Zm00001d042133_P003 | Maize | cytosol | 9.98 | 13.07 |
| Zm00001d053572_P002 | Maize | cytosol | 13.44 | 12.75 |
Protein Annotations
| EntrezGene:100281694 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK46477.1 | UniProt:B6SXV2 | EMBL:EU957567 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44578 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000182D062 | EnsemblPlantsGene:Zm00001d026397 | EnsemblPlants:Zm00001d026397_P001 | EnsemblPlants:Zm00001d026397_T001 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding protein AKIP1%3B RNA-binding protein AKIP1 isoform 1%3B RNA-binding protein AKIP1 isoform 2
Coordinates
chr10:-:145157330..145158895
Molecular Weight (calculated)
53289.7 Da
IEP (calculated)
4.941
GRAVY (calculated)
-0.338
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKKRKADP AESADAAEAA AGNHRQEPAP SEPKPRATIY FPITDDPPEP AAEEDEEDGA GEDEDDVEDI GKLLEPLSRE QLVALLRTAA ETSPATMAAV
101: RRAVESDPAS RKLFVHGLGW GASAEDLRSA FSCFGELEDC RVISDKQSGR SKGYGFVLFR SRRSALRALS RPQLQIGGRL AFCHLAASGP APPASQSQNP
201: SSNPNTNANS NSNTTTNASG SSSSQPDNMP RKIFVGNVHA DVDVDRLYNY FAQFGEIEEG PFGFDKNTGK PKGFALFVYK SVESARRALE EPMKNFDGKT
301: LNVQKAIDGR TKGSSGTNTN ANSNPTTASV AAAAAAAQMT APATAAISPY DPSAYGATAV PDMSFAQQAA MLGFGAQQQA FAQPNAMLAM IAAMQNPAAL
401: GMTPAMFAAM NPAFAAAALG AGGQQAQTAG LTGFGAQGFG TQAFGAGGAV FPNAAGVQAA TAAYQGGGAP PGFQGPPGFQ VGQATTQTST AVAAAGYQAG
501: AAGQGQVPGA QIGGTGFQGG Y
101: RRAVESDPAS RKLFVHGLGW GASAEDLRSA FSCFGELEDC RVISDKQSGR SKGYGFVLFR SRRSALRALS RPQLQIGGRL AFCHLAASGP APPASQSQNP
201: SSNPNTNANS NSNTTTNASG SSSSQPDNMP RKIFVGNVHA DVDVDRLYNY FAQFGEIEEG PFGFDKNTGK PKGFALFVYK SVESARRALE EPMKNFDGKT
301: LNVQKAIDGR TKGSSGTNTN ANSNPTTASV AAAAAAAQMT APATAAISPY DPSAYGATAV PDMSFAQQAA MLGFGAQQQA FAQPNAMLAM IAAMQNPAAL
401: GMTPAMFAAM NPAFAAAALG AGGQQAQTAG LTGFGAQGFG TQAFGAGGAV FPNAAGVQAA TAAYQGGGAP PGFQGPPGFQ VGQATTQTST AVAAAGYQAG
501: AAGQGQVPGA QIGGTGFQGG Y
001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R
Arabidopsis Description
UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.