Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76075 | Sorghum | plastid | 75.3 | 70.82 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 56.63 | 62.88 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 56.33 | 62.13 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 55.42 | 61.33 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 55.72 | 60.86 |
| Os06t0220600-01 | Rice | plastid | 62.05 | 60.06 |
| Zm00001d052212_P001 | Maize | nucleus | 28.92 | 59.63 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.11 | 56.6 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 30.12 | 56.5 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 34.94 | 49.15 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 37.95 | 47.73 |
| Zm00001d018103_P002 | Maize | plasma membrane | 45.48 | 47.48 |
| AT5G53720.1 | Thale cress | cytosol | 14.16 | 47.0 |
| CDY51790 | Canola | cytosol | 14.76 | 45.79 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 14.16 | 41.96 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 27.11 | 37.34 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 31.02 | 36.92 |
| PGSC0003DMT400025900 | Potato | nucleus | 31.02 | 35.89 |
| KRH53608 | Soybean | nucleus | 24.7 | 33.33 |
| KRH64318 | Soybean | nucleus | 24.4 | 31.52 |
| AT5G53680.1 | Thale cress | cytosol | 15.96 | 31.36 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 26.2 | 31.18 |
| Zm00001d042641_P001 | Maize | nucleus | 27.11 | 30.51 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 15.96 | 30.29 |
| Zm00001d046716_P001 | Maize | nucleus | 31.33 | 28.89 |
| Zm00001d042042_P001 | Maize | nucleus | 29.52 | 28.82 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 25.6 | 28.62 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 26.51 | 25.88 |
| Zm00001d051627_P002 | Maize | plastid | 28.61 | 25.82 |
| Zm00001d017829_P002 | Maize | plastid | 25.9 | 24.93 |
| Bra029612.1-P | Field mustard | nucleus | 14.46 | 16.72 |
| AT3G06970.1 | Thale cress | nucleus | 15.36 | 16.09 |
| CDY05301 | Canola | nucleus | 15.06 | 14.24 |
| CDY24657 | Canola | nucleus | 14.46 | 14.12 |
| Zm00001d034200_P001 | Maize | nucleus | 7.23 | 14.04 |
| Zm00001d044469_P003 | Maize | nucleus | 18.67 | 13.87 |
| Zm00001d034201_P001 | Maize | nucleus | 10.24 | 13.55 |
| Zm00001d030579_P001 | Maize | mitochondrion | 14.16 | 13.51 |
| Zm00001d016349_P002 | Maize | nucleus | 15.36 | 13.28 |
| Zm00001d011336_P002 | Maize | nucleus | 17.77 | 13.17 |
| CDY08023 | Canola | nucleus | 14.16 | 13.06 |
| Zm00001d007839_P001 | Maize | cytosol | 13.86 | 12.43 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 15.36 | 12.35 |
| Zm00001d011885_P008 | Maize | cytosol | 13.25 | 12.22 |
| CDX74070 | Canola | cytosol | 13.25 | 12.22 |
| Bra001228.1-P | Field mustard | cytosol | 13.25 | 12.15 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.57 | 12.11 |
| Zm00001d046190_P001 | Maize | extracellular | 15.06 | 11.96 |
| Zm00001d019079_P001 | Maize | cytosol | 15.66 | 11.61 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 13.25 | 11.49 |
| Zm00001d019084_P002 | Maize | nucleus | 15.66 | 11.45 |
| Zm00001d018730_P001 | Maize | nucleus | 12.65 | 11.23 |
| Zm00001d007772_P001 | Maize | nucleus | 15.06 | 11.14 |
| Zm00001d032739_P001 | Maize | nucleus | 14.76 | 11.06 |
| Zm00001d014058_P002 | Maize | plastid | 15.66 | 10.79 |
| Zm00001d006704_P002 | Maize | nucleus | 15.66 | 10.74 |
| Zm00001d002141_P006 | Maize | nucleus | 16.27 | 10.36 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 16.27 | 9.98 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.66 | 9.98 |
| Zm00001d019086_P001 | Maize | nucleus | 15.96 | 9.96 |
| Zm00001d053572_P002 | Maize | cytosol | 15.66 | 9.47 |
| Zm00001d042133_P003 | Maize | cytosol | 9.34 | 7.79 |
Protein Annotations
| EntrezGene:100280521 | EntrezGene:100383713 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK83279.1 | EMBL:BT068098 |
| UniProt:C0PIH9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000195CE46 | EnsemblPlantsGene:Zm00001d037209 | EnsemblPlants:Zm00001d037209_P001 |
| EnsemblPlants:Zm00001d037209_T001 | SEG:seg | : | : | : | : |
Description
Probable RNA-binding protein ARP1
Coordinates
chr6:-:115848018..115852402
Molecular Weight (calculated)
35093.7 Da
IEP (calculated)
9.879
GRAVY (calculated)
-0.384
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPAASSS TSGSPAAGGP RSRFGDTTLT KVFVGGLAWE TPSEGLRQHF ERYGDILEAV VITDRLTGRS KGYGFVTFRE PEAARRAVQD PNPTIAGRRA
101: NCNIASLGPP RPTQPGVAGR GGPYTVGPHH LQVPQFVPRA PASPLQMMVP QQQQQHGGAP AAAIYPSPQF GYCWYPPDFQ YQQALASPQA LQNYYAQLYG
201: LTTSPSAAAA PYHHQYLGYM APPPPTPRMI LPPPPPLAAQ QVTAVQPLVQ HPPPPAQQVT VQPLLQHPPP QIHAPFFPAP SLPQHNFRLH PPPQAMAVLP
301: PNTTAGGSLP PADQAAAPAA RATNASSTRP GA
101: NCNIASLGPP RPTQPGVAGR GGPYTVGPHH LQVPQFVPRA PASPLQMMVP QQQQQHGGAP AAAIYPSPQF GYCWYPPDFQ YQQALASPQA LQNYYAQLYG
201: LTTSPSAAAA PYHHQYLGYM APPPPTPRMI LPPPPPLAAQ QVTAVQPLVQ HPPPPAQQVT VQPLLQHPPP QIHAPFFPAP SLPQHNFRLH PPPQAMAVLP
301: PNTTAGGSLP PADQAAAPAA RATNASSTRP GA
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.