Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44555 | Canola | cytosol, nucleus, plastid | 96.42 | 96.42 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 96.14 | 95.88 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 95.59 | 95.33 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 77.14 | 80.92 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 67.77 | 68.33 |
| PGSC0003DMT400012586 | Potato | nucleus | 40.77 | 43.02 |
| Solyc04g077520.2.1 | Tomato | nucleus | 39.67 | 42.23 |
| CDX75170 | Canola | extracellular | 14.88 | 33.13 |
| CDY12068 | Canola | nucleus | 30.58 | 31.01 |
| CDX90262 | Canola | nucleus | 30.85 | 29.32 |
| CDY50131 | Canola | nucleus | 29.75 | 28.27 |
| CDY23739 | Canola | nucleus | 29.2 | 27.68 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 35.81 | 27.6 |
| CDY51790 | Canola | cytosol | 7.99 | 27.1 |
| CDY17173 | Canola | nucleus | 27.55 | 26.53 |
| CDY67299 | Canola | nucleus | 27.82 | 26.51 |
| CDX79527 | Canola | nucleus | 29.2 | 26.11 |
| CDX84689 | Canola | nucleus | 29.2 | 25.98 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.99 | 25.89 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 29.2 | 25.79 |
| CDY41059 | Canola | nucleus | 29.48 | 25.06 |
| CDY07975 | Canola | nucleus | 32.23 | 24.84 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 28.37 | 24.82 |
| CDX74030 | Canola | nucleus | 32.23 | 24.79 |
| CDY22136 | Canola | nucleus | 32.78 | 24.49 |
| CDX77783 | Canola | nucleus | 28.65 | 24.47 |
| CDY37724 | Canola | nucleus | 21.49 | 24.15 |
| CDY24201 | Canola | nucleus | 23.97 | 24.03 |
| CDY43360 | Canola | nucleus | 23.97 | 24.03 |
| CDY66272 | Canola | nucleus | 31.96 | 23.72 |
| CDY26229 | Canola | nucleus | 24.24 | 23.72 |
| CDY35966 | Canola | nucleus | 32.23 | 23.68 |
| CDY48318 | Canola | nucleus | 24.24 | 23.66 |
| CDX94301 | Canola | nucleus | 28.37 | 23.3 |
| CDY46690 | Canola | nucleus | 27.0 | 22.9 |
| CDX92807 | Canola | nucleus | 28.37 | 22.89 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 20.39 | 22.84 |
| CDY11989 | Canola | nucleus | 27.0 | 22.69 |
| CDX89316 | Canola | endoplasmic reticulum | 27.82 | 22.6 |
| CDY36753 | Canola | nucleus | 26.72 | 22.3 |
| CDY46689 | Canola | nucleus | 28.37 | 22.25 |
| CDY28918 | Canola | mitochondrion | 28.65 | 21.49 |
| CDY42724 | Canola | cytosol | 21.21 | 20.32 |
| CDY69852 | Canola | cytosol | 21.21 | 20.16 |
| CDX69279 | Canola | nucleus | 12.4 | 19.07 |
| CDY25957 | Canola | nucleus | 28.93 | 18.99 |
| CDY31859 | Canola | nucleus | 12.4 | 18.67 |
| CDY01349 | Canola | nucleus | 12.4 | 18.67 |
| CDY02889 | Canola | nucleus | 10.74 | 17.97 |
| CDX73279 | Canola | cytosol | 11.85 | 17.77 |
| CDY25759 | Canola | nucleus | 11.85 | 17.27 |
| CDY31508 | Canola | nucleus | 11.85 | 17.2 |
| CDX73451 | Canola | cytosol | 11.85 | 17.2 |
| CDY36357 | Canola | nucleus | 25.62 | 17.16 |
| CDY42577 | Canola | nucleus | 25.62 | 17.06 |
| CDX96615 | Canola | nucleus | 11.85 | 17.06 |
| CDY69197 | Canola | nucleus | 10.47 | 16.89 |
| CDY64698 | Canola | nucleus | 12.12 | 16.86 |
| CDX78261 | Canola | nucleus | 11.85 | 16.6 |
| CDY33653 | Canola | nucleus | 11.57 | 16.6 |
| CDY04769 | Canola | nucleus | 10.74 | 16.46 |
| CDX88283 | Canola | nucleus | 12.67 | 16.43 |
| CDY29496 | Canola | nucleus | 11.57 | 16.09 |
| CDY40554 | Canola | nucleus | 28.65 | 15.85 |
| CDX87594 | Canola | nucleus | 12.67 | 14.38 |
| CDY25867 | Canola | nucleus | 15.98 | 14.32 |
| CDY55846 | Canola | nucleus | 15.7 | 14.21 |
| CDY24106 | Canola | nucleus | 15.98 | 14.04 |
| CDY41556 | Canola | nucleus | 11.02 | 13.79 |
| CDX74070 | Canola | cytosol | 13.5 | 13.61 |
| CDY26001 | Canola | nucleus | 15.15 | 13.51 |
| CDY67263 | Canola | nucleus | 12.12 | 13.41 |
| CDX76950 | Canola | nucleus | 11.29 | 13.31 |
| CDX79253 | Canola | nucleus | 10.19 | 13.21 |
| CDX88432 | Canola | nucleus | 10.19 | 13.03 |
| CDX87460 | Canola | nucleus | 10.19 | 12.98 |
| CDY08023 | Canola | nucleus | 12.67 | 12.78 |
| CDX68024 | Canola | nucleus | 9.92 | 12.72 |
| CDY13782 | Canola | nucleus | 10.74 | 12.7 |
| CDY27523 | Canola | nucleus | 11.29 | 12.69 |
| CDX80046 | Canola | nucleus | 11.02 | 12.66 |
| CDY41557 | Canola | nucleus | 11.02 | 12.66 |
| CDY48016 | Canola | nucleus | 11.29 | 12.58 |
| CDY27186 | Canola | nucleus | 15.15 | 12.25 |
| CDY06947 | Canola | nucleus | 14.33 | 12.09 |
| CDX72106 | Canola | nucleus | 15.15 | 12.09 |
| CDY57580 | Canola | nucleus | 14.6 | 11.96 |
| CDY46642 | Canola | nucleus | 9.37 | 11.76 |
| CDX76015 | Canola | nucleus | 9.64 | 11.48 |
| CDY05301 | Canola | nucleus | 11.02 | 11.4 |
| CDY21356 | Canola | nucleus | 9.09 | 11.38 |
| CDY24657 | Canola | nucleus | 10.47 | 11.18 |
| CDY00446 | Canola | nucleus | 9.09 | 9.71 |
| CDY47382 | Canola | golgi, plastid | 11.02 | 9.62 |
| CDY13339 | Canola | mitochondrion | 4.41 | 9.52 |
| CDY15850 | Canola | nucleus | 9.64 | 9.46 |
| CDY21399 | Canola | mitochondrion | 2.48 | 6.21 |
| CDX69277 | Canola | mitochondrion | 3.03 | 5.91 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HWH0 | UniProt:A0A078HWH0 | EnsemblPlants:CDY42061 | ProteinID:CDY42061 |
| ProteinID:CDY42061.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00074093001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE18E0 | SEG:seg |
Description
BnaC09g15260DBnaC09g15260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWH0]
Coordinates
chrLK032513:+:256853..258860
Molecular Weight (calculated)
40447.0 Da
IEP (calculated)
8.375
GRAVY (calculated)
-0.561
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCDQYKLFV GGIPRETSEE SLKQHFSRYG AVLGALVAKE RATGQPRGFG FVRFANALDV DKALTDSHFI LGRAVDVKKA IPKQEHMRYQ QPNMQPYVSQ
101: VQQNNGGGVH DILSNGNNNN HRTKKLFVGG LSSETTEEEF KTYFEKFGKT TDVVVMHDSV TNRPRGFGFV TYDSENSVEI VMQSHFHELS NKRVEVKRAI
201: PKEGIQSNNG GNHHNLPPTY SSFKATPYVP ESNGYGMFLQ YPPPVLGYHQ GLPGFHYPYG YPVTAQGPNL PWNNQIMPPT TGFYGHPPPL PTNTPWYLPS
301: MNGFDPTGMS VTVFNAMPWP VAGDGVGVII PRLEDMKLEV PSQAHERMNG GIMVKPLPNG TYR
101: VQQNNGGGVH DILSNGNNNN HRTKKLFVGG LSSETTEEEF KTYFEKFGKT TDVVVMHDSV TNRPRGFGFV TYDSENSVEI VMQSHFHELS NKRVEVKRAI
201: PKEGIQSNNG GNHHNLPPTY SSFKATPYVP ESNGYGMFLQ YPPPVLGYHQ GLPGFHYPYG YPVTAQGPNL PWNNQIMPPT TGFYGHPPPL PTNTPWYLPS
301: MNGFDPTGMS VTVFNAMPWP VAGDGVGVII PRLEDMKLEV PSQAHERMNG GIMVKPLPNG TYR
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.