Factsheet for Bra027860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48851	Canola	cytosol, nucleus, peroxisome	98.08	98.08
CDY42061	Canola	cytosol, nucleus, plastid	95.33	95.59
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	18.41	85.9
AT1G58470.2	Thale cress	cytosol, nucleus, plastid	67.03	67.78
PGSC0003DMT400012586	Potato	nucleus	40.38	42.73
Solyc04g077520.2.1	Tomato	nucleus	39.29	41.94
Bra010757.1-P	Field mustard	nucleus	30.49	29.06
Bra021850.1-P	Field mustard	nucleus	28.85	28.61
Bra021062.1-P	Field mustard	nucleus	29.95	27.81
VIT_18s0001g08640.t01	Wine grape	nucleus	35.71	27.6
Bra005496.1-P	Field mustard	nucleus	27.47	26.6
Bra017475.1-P	Field mustard	nucleus	30.22	25.76
Bra022938.1-P	Field mustard	nucleus	28.85	25.74
Bra024928.1-P	Field mustard	nucleus	29.67	25.71
Bra001267.1-P	Field mustard	nucleus	32.14	24.84
Bra040031.1-P	Field mustard	nucleus	32.69	24.49
Bra029681.1-P	Field mustard	nucleus	32.69	23.75
Bra028973.1-P	Field mustard	nucleus	28.02	23.56
Bra039380.1-P	Field mustard	nucleus	23.35	23.48
Bra019094.1-P	Field mustard	nucleus	29.12	22.89
Bra022145.1-P	Field mustard	nucleus	28.85	22.83
Bra026413.1-P	Field mustard	nucleus	25.82	22.22
KRH05541	Soybean	cytosol, endoplasmic reticulum	19.51	21.91
Bra012254.1-P	Field mustard	nucleus	12.09	18.26
Bra012350.1-P	Field mustard	nucleus	12.09	17.67
Bra017802.1-P	Field mustard	nucleus	19.78	17.65
Bra025568.1-P	Field mustard	nucleus	25.82	17.25
Bra024547.1-P	Field mustard	nucleus	11.26	17.15
Bra007096.1-P	Field mustard	nucleus	12.09	16.99
Bra016445.1-P	Field mustard	nucleus	11.54	16.28
Bra025852.1-P	Field mustard	nucleus	11.54	16.09
Bra010203.1-P	Field mustard	nucleus	12.36	14.75
Bra038113.1-P	Field mustard	nucleus	16.21	14.25
Bra039664.1-P	Field mustard	nucleus	15.93	13.98
Bra003651.1-P	Field mustard	nucleus	9.89	13.28
Bra031230.1-P	Field mustard	nucleus	10.71	12.7
Bra040485.1-P	Field mustard	nucleus	11.26	12.58
Bra004508.1-P	Field mustard	nucleus	10.71	12.5
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	10.71	12.5
Bra007277.1-P	Field mustard	nucleus	15.38	12.47
Bra001228.1-P	Field mustard	cytosol	12.36	12.43
Bra016954.1-P	Field mustard	nucleus	14.84	12.27
Bra012321.1-P	Field mustard	nucleus	9.62	12.11
Bra031385.1-P	Field mustard	nucleus	9.34	11.72
Bra029612.1-P	Field mustard	nucleus	9.07	11.5
Bra014667.1-P	Field mustard	nucleus	9.62	11.48
Bra030265.1-P	Field mustard	nucleus	9.34	9.29

Protein Annotations

EnsemblPlants:Bra027860.1	EnsemblPlants:Bra027860.1-P	EnsemblPlantsGene:Bra027860	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025427C5	UniProt:M4EGE6	MapMan:35.1	:	:

Description

AT1G58470 (E=1e-114) ATRBP1, RBP1 | ATRBP1 (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 1); RNA binding / single-stranded RNA binding

Coordinates

chrA09:-:9327473..9328698

Molecular Weight (calculated)

40445.9 Da

IEP (calculated)

8.232

GRAVY (calculated)

-0.566

Length

364 amino acids

Sequence
(BLAST)

001: MDCDRNKLFV GGIPRETSEE SLKQHFSRYG AVLGALVAKE RATGQPRGFG FVRFANALDV DKALADSHFI LGRAVDVKKA IPIHDMRYQQ QNMQPYVSQV
101: QQNNGGGVHD ILSNGNNNNN HRTKKLFVGG LSSETTEEEF KTYFEKFGKT TDVVVMHDSV TNRPRGFGFV TYDSENSVEI VMQSHFHELS NKRVEVKRAI
201: PKEGIQSNNG GGNHHHLPPT YSSFKATPYV PESNGYGMFL QYPPPVYGYH QGLPGFHYPY GYPVTAQGPN LPWNNQIMPP TTGFYGHPPP PPTNTPWCLP
301: YMNGFDPAGM SVTVFNAMPW PVAGDGVGVI IPRLEDMKLE VPSQAHERMN GGIMGKTLPN GTYR

Best Arabidopsis Sequence Match ( AT1G58470.2 )
(BLAST)

001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI

Arabidopsis Description

RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.