Factsheet for Bra015741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88283	Canola	nucleus	73.72	82.14
CDX87594	Canola	nucleus	82.37	80.31
AT1G76460.1	Thale cress	nucleus	67.63	74.04
Bra025852.1-P	Field mustard	nucleus	55.13	65.9
Bra016445.1-P	Field mustard	nucleus	51.92	62.79
Bra012254.1-P	Field mustard	nucleus	48.4	62.66
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	51.6	56.49
KRH51553	Soybean	nucleus, plastid	51.28	55.94
KRH60871	Soybean	nucleus, plastid	50.96	55.59
PGSC0003DMT400035478	Potato	nucleus, plastid	36.86	40.78
Solyc02g082270.2.1	Tomato	nucleus	36.54	40.43
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	8.01	32.05
Bra012350.1-P	Field mustard	nucleus	23.08	28.92
Bra031385.1-P	Field mustard	nucleus	26.6	28.62
Bra024547.1-P	Field mustard	nucleus	21.79	28.45
Bra003651.1-P	Field mustard	nucleus	24.68	28.41
Bra012321.1-P	Field mustard	nucleus	25.96	28.03
Bra007096.1-P	Field mustard	nucleus	22.12	26.64
Bra004508.1-P	Field mustard	nucleus	26.6	26.6
Bra010203.1-P	Field mustard	nucleus	25.64	26.23
Bra040485.1-P	Field mustard	nucleus	26.28	25.15
Bra010757.1-P	Field mustard	nucleus	16.03	13.09
Bra038113.1-P	Field mustard	nucleus	16.67	12.56
Bra031230.1-P	Field mustard	nucleus	12.18	12.38
Bra039664.1-P	Field mustard	nucleus	16.35	12.29
Bra029612.1-P	Field mustard	nucleus	11.22	12.2
Bra022938.1-P	Field mustard	nucleus	15.71	12.01
Bra005496.1-P	Field mustard	nucleus	14.42	11.97
Bra021850.1-P	Field mustard	nucleus	13.78	11.72
Bra024928.1-P	Field mustard	nucleus	15.38	11.43
Bra039380.1-P	Field mustard	nucleus	13.14	11.33
Bra017475.1-P	Field mustard	nucleus	15.38	11.24
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.5	10.71
Bra014667.1-P	Field mustard	nucleus	10.26	10.49
Bra022145.1-P	Field mustard	nucleus	15.38	10.43
Bra016954.1-P	Field mustard	nucleus	14.42	10.23
Bra021062.1-P	Field mustard	nucleus	12.82	10.2
Bra001228.1-P	Field mustard	cytosol	11.54	9.94
Bra007277.1-P	Field mustard	nucleus	14.1	9.8
Bra017802.1-P	Field mustard	nucleus	12.5	9.56
Bra001267.1-P	Field mustard	nucleus	14.42	9.55
Bra025568.1-P	Field mustard	nucleus	16.35	9.36
Bra030265.1-P	Field mustard	nucleus	10.9	9.29
Bra040031.1-P	Field mustard	nucleus	14.42	9.26
Bra029681.1-P	Field mustard	nucleus	14.1	8.78
Bra028973.1-P	Field mustard	nucleus	11.22	8.08
Bra026413.1-P	Field mustard	nucleus	10.26	7.57
Bra019094.1-P	Field mustard	nucleus	11.22	7.56

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EnsemblPlantsGene:Bra015741	EnsemblPlants:Bra015741.1	EnsemblPlants:Bra015741.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DGW5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025420D5	SEG:seg

Description

AT1G76460 (E=2e-060) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:21071537..21073279

Molecular Weight (calculated)

34502.0 Da

IEP (calculated)

9.381

GRAVY (calculated)

-0.224

Length

312 amino acids

Sequence
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSEAL RRHFEQFGDI LEAVVIADKN TGRSKGYGFW IIAVVDLHVV HLVDFVWLGR LRPASPYIGN
101: VQGPRGPPFG NYPYQQPLPY NYQQGVVYPY GVAAYGPEYM YSQSQGLYGP YMGQQYLQVY GVPGAVNTPV YQYGQFNQTV PSGQSYTALQ GYSVPGSHVL
201: QLGGSTVSAM TTSSMPALQA PYPPGPAPAQ SHIIVHPPQF MQSSSSDQTT RLYKIVFALT GRAQKEKGKW ESQGLWLQFS YSSINVQKML LAQAGFEFAG
301: SITVFLRRGN RW

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.