Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42724 | Canola | cytosol | 92.35 | 92.35 |
| CDY69852 | Canola | cytosol | 92.35 | 91.62 |
| Bra017802.1-P | Field mustard | nucleus | 91.29 | 84.8 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 70.98 | 74.93 |
| KRH77004 | Soybean | nucleus | 70.98 | 74.31 |
| KRH28467 | Soybean | cytosol | 70.18 | 72.88 |
| PGSC0003DMT400010280 | Potato | cytosol | 69.92 | 71.43 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 61.74 | 71.12 |
| Solyc02g090910.2.1 | Tomato | nucleus | 69.66 | 70.21 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 65.7 | 69.36 |
| Zm00001d011885_P008 | Maize | cytosol | 63.59 | 66.94 |
| Os01t0945800-01 | Rice | nucleus | 63.85 | 66.67 |
| KXG34100 | Sorghum | cytosol | 63.06 | 66.39 |
| Os05t0376000-00 | Rice | cytosol | 35.88 | 65.07 |
| HORVU1Hr1G057660.1 | Barley | cytosol | 62.01 | 64.56 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 61.74 | 64.11 |
| TraesCS1D01G237800.3 | Wheat | cytosol | 61.48 | 64.01 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 61.21 | 63.56 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 54.35 | 55.23 |
| TraesCS3D01G480300.1 | Wheat | cytosol | 53.83 | 54.69 |
| HORVU3Hr1G105930.10 | Barley | cytoskeleton, cytosol, nucleus | 53.3 | 54.45 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 53.56 | 54.42 |
| Zm00001d042133_P003 | Maize | cytosol | 51.98 | 49.5 |
| CDX69279 | Canola | nucleus | 27.44 | 44.07 |
| AT5G53720.1 | Thale cress | cytosol | 7.12 | 27.0 |
| AT2G33410.1 | Thale cress | nucleus | 26.91 | 25.25 |
| AT1G17640.1 | Thale cress | nucleus | 22.69 | 23.31 |
| AT4G14300.1 | Thale cress | nucleus | 25.07 | 23.11 |
| AT5G53680.1 | Thale cress | cytosol | 10.29 | 23.08 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 21.37 | 22.5 |
| AT3G13224.2 | Thale cress | nucleus | 20.58 | 21.79 |
| AT3G07810.2 | Thale cress | nucleus | 28.23 | 21.62 |
| AT5G40490.1 | Thale cress | nucleus | 22.96 | 20.57 |
| AT1G33470.1 | Thale cress | cytosol | 12.93 | 20.0 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 23.48 | 19.65 |
| AT4G26650.1 | Thale cress | nucleus | 23.22 | 19.34 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 8.18 | 17.71 |
| AT5G55550.10 | Thale cress | nucleus | 23.48 | 17.55 |
| AT1G20880.1 | Thale cress | nucleus | 12.14 | 16.79 |
| AT3G15010.2 | Thale cress | nucleus | 17.68 | 16.58 |
| AT1G76460.1 | Thale cress | nucleus | 11.87 | 15.79 |
| AT2G41060.3 | Thale cress | nucleus | 17.68 | 14.86 |
| AT3G54770.1 | Thale cress | nucleus | 9.76 | 14.18 |
| AT1G78260.1 | Thale cress | nucleus | 10.55 | 13.94 |
| AT3G56860.10 | Thale cress | nucleus | 17.41 | 13.81 |
| AT2G46780.1 | Thale cress | nucleus | 12.14 | 13.69 |
| AT1G22910.3 | Thale cress | nucleus | 12.4 | 13.54 |
| AT1G22330.1 | Thale cress | nucleus | 10.29 | 13.4 |
| AT2G22100.1 | Thale cress | nucleus | 12.4 | 12.3 |
| AT3G06970.1 | Thale cress | nucleus | 9.76 | 11.67 |
| AT2G22090.2 | Thale cress | nucleus | 10.03 | 10.95 |
| AT2G19380.1 | Thale cress | nucleus | 10.82 | 6.69 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:829850 | ProteinID:AEE86724.1 | ProteinID:AEE86725.1 | ArrayExpress:AT4G36960 |
| EnsemblPlantsGene:AT4G36960 | RefSeq:AT4G36960 | TAIR:AT4G36960 | RefSeq:AT4G36960-TAIR-G | EnsemblPlants:AT4G36960.2 | TAIR:AT4G36960.2 |
| EMBL:AY048286 | Unigene:At.4642 | EMBL:BT000573 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001154290.1 |
| RefSeq:NP_568011.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR45519 | UniProt:Q94AC3 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC5C9 | SEG:seg | : | : |
Description
AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
Coordinates
chr4:+:17426968..17429765
Molecular Weight (calculated)
41694.0 Da
IEP (calculated)
7.270
GRAVY (calculated)
-0.573
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.