Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36357 | Canola | nucleus | 88.65 | 69.19 |
| CDY42577 | Canola | nucleus | 88.65 | 68.81 |
| Bra025568.1-P | Field mustard | nucleus | 88.42 | 68.62 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 60.76 | 68.35 |
| KRH56541 | Soybean | nucleus | 31.68 | 67.0 |
| KRH07154 | Soybean | nucleus | 58.63 | 66.67 |
| KRG94084 | Soybean | nucleus | 58.16 | 65.78 |
| KRG93213 | Soybean | nucleus | 57.68 | 64.72 |
| Solyc02g093340.2.1 | Tomato | nucleus | 56.5 | 61.44 |
| PGSC0003DMT400032811 | Potato | nucleus | 55.79 | 60.67 |
| AT3G13224.2 | Thale cress | nucleus | 47.52 | 56.15 |
| AT1G17640.1 | Thale cress | nucleus | 36.17 | 41.46 |
| AT4G14300.1 | Thale cress | nucleus | 32.15 | 33.09 |
| AT2G33410.1 | Thale cress | nucleus | 30.5 | 31.93 |
| AT3G07810.2 | Thale cress | nucleus | 34.75 | 29.7 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 29.08 | 27.15 |
| AT4G26650.1 | Thale cress | nucleus | 27.9 | 25.93 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 21.75 | 25.56 |
| AT5G53720.1 | Thale cress | cytosol | 5.44 | 23.0 |
| AT4G36960.2 | Thale cress | cytosol | 20.57 | 22.96 |
| AT1G20880.1 | Thale cress | nucleus | 14.18 | 21.9 |
| AT5G55550.10 | Thale cress | nucleus | 26.24 | 21.89 |
| AT1G33470.1 | Thale cress | cytosol | 11.58 | 20.0 |
| AT2G41060.3 | Thale cress | nucleus | 21.28 | 19.96 |
| AT3G15010.2 | Thale cress | nucleus | 18.91 | 19.8 |
| AT1G76460.1 | Thale cress | nucleus | 13.24 | 19.65 |
| AT3G56860.10 | Thale cress | nucleus | 21.28 | 18.83 |
| AT3G54770.1 | Thale cress | nucleus | 11.35 | 18.39 |
| AT5G53680.1 | Thale cress | cytosol | 7.33 | 18.34 |
| AT1G78260.1 | Thale cress | nucleus | 12.06 | 17.77 |
| AT1G22330.1 | Thale cress | nucleus | 11.11 | 16.15 |
| AT1G22910.3 | Thale cress | nucleus | 12.29 | 14.99 |
| AT2G22100.1 | Thale cress | nucleus | 13.48 | 14.92 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 6.15 | 14.86 |
| AT2G46780.1 | Thale cress | nucleus | 11.11 | 13.99 |
| AT2G22090.2 | Thale cress | nucleus | 10.87 | 13.26 |
| AT3G06970.1 | Thale cress | nucleus | 8.27 | 11.04 |
| AT2G19380.1 | Thale cress | nucleus | 10.64 | 7.34 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:834047 | ProteinID:AED94553.1 | ArrayExpress:AT5G40490 | EnsemblPlantsGene:AT5G40490 |
| RefSeq:AT5G40490 | TAIR:AT5G40490 | RefSeq:AT5G40490-TAIR-G | EnsemblPlants:AT5G40490.1 | TAIR:AT5G40490.1 | EMBL:AY136466 |
| Unigene:At.30284 | ProteinID:BAB08520.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003730 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0019013 | GO:GO:0030529 |
| GO:GO:0048576 | GO:GO:0048578 | GO:GO:0097157 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_198865.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PRINTS:PR01228 | PFscan:PS50102 | PANTHER:PTHR45276 | PANTHER:PTHR45276:SF2 | UniProt:Q9FM47 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A0E77 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
Coordinates
chr5:+:16225326..16227757
Molecular Weight (calculated)
42410.5 Da
IEP (calculated)
6.434
GRAVY (calculated)
-0.727
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.